| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,590 | T→C | 19.0% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 19.0% | 206.8 / 42.0 | 100 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (40/41); new base C (10/9); total (50/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGA > NC_002947/197445‑197727 | tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 7:262446/1‑149 (MQ=37) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 2:96446/1‑148 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 6:143677/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 2:288094/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 4:133431/149‑1 (MQ=37) gCGAGCCCTTCGGTCACCGAAGGCGGCGTGATCCCCTACACCGTGATCCTGAGCAATGCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGTCAAGACCCAGGGCAGCGTCGATTTCCAGAc < 3:191126/149‑1 (MQ=255) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGAccc > 6:313208/1‑149 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 6:285230/1‑138 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc < 5:285230/138‑1 (MQ=37) ggTCACCTAAGGCGGCGTGATCACCTACACCGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg < 5:263612/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 6:24330/148‑1 (MQ=37) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGTCGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAAGCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg < 7:261282/148‑1 (MQ=255) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACAATGCCCAACGGAAAAAAAATAACCT‑‑TTGAAGCAGTCAAGAACAAGGGCAGCGTCGATTTCAAGAAAAAGGAGAATGACGTc > 4:252330/1‑148 (MQ=2) aaGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 7:35516/149‑1 (MQ=37) aGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac > 5:301524/1‑148 (MQ=37) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt < 7:203374/120‑1 (MQ=39) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCAATACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt > 8:203374/1‑120 (MQ=255) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCGCCATGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 1:96446/149‑1 (MQ=255) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 6:223122/149‑1 (MQ=37) cgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 5:82951/149‑1 (MQ=37) tGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:96417/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:69762/149‑1 (MQ=37) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGGTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:71202/1‑147 (MQ=255) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:71202/146‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 8:170187/148‑1 (MQ=37) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAg > 7:76663/1‑149 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 7:113270/1‑137 (MQ=37) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 8:113270/137‑1 (MQ=37) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCg > 5:240000/1‑149 (MQ=39) cTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 5:110236/1‑114 (MQ=35) cTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 6:110236/114‑1 (MQ=35) tgcgCAACCCTGCCCAGACGCCGGTGCCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAACCCCCAGGGCAGCGTCGACTTCCCGCCCCCGGCGCATGACGGCTACAACAACGGTTCGCCTGTCAGCGGCACCATc > 1:193594/4‑149 (MQ=11) tGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 3:303249/1‑149 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCg < 1:225331/148‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTACAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCCCCCTCga > 6:24501/1‑149 (MQ=11) gCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgag < 5:313145/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACg < 6:240000/149‑1 (MQ=37) ccggCCCAGACGCCGGTACCC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc < 4:81570/146‑1 (MQ=255) cTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCAGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTCACCAACGAGAACGc > 3:191321/1‑148 (MQ=255) cccAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac < 7:54430/148‑1 (MQ=37) cccAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 6:282011/1‑147 (MQ=17) cccAGACGCCGGTAACC‑GTGACCCTATCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 2:142101/1‑147 (MQ=17) ccAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAg > 2:11405/1‑149 (MQ=37) cAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 8:262446/149‑1 (MQ=37) aGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGc < 3:181546/125‑1 (MQ=17) aGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGc > 4:181546/1‑125 (MQ=17) gACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 4:138349/149‑1 (MQ=37) aCGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:183455/1‑149 (MQ=37) gCCGGTGACC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGt > 5:311867/1‑148 (MQ=255) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCATGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca < 5:272950/138‑1 (MQ=37) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 5:178793/1‑101 (MQ=35) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 6:178793/101‑1 (MQ=35) gTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca > 6:272950/1‑138 (MQ=37) tgaCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:222263/147‑1 (MQ=255) tgaCC‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 8:3833/147‑1 (MQ=255) tAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 8:136955/1‑149 (MQ=35) aCC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 1:11405/148‑1 (MQ=34) cc‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 2:76852/1‑149 (MQ=33) cc‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 4:277961/1‑149 (MQ=33) c‑GTGACCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 6:161494/149‑1 (MQ=12) c‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa > 6:108699/1‑141 (MQ=32) c‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 5:108699/141‑1 (MQ=32) aCCCTGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 5:201017/148‑1 (MQ=12) ccTGTCCAACGGCCAAACGATTATCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 8:172302/131‑1 (MQ=255) ccTGTCCAACGGCCAAACGATTATCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg > 7:172302/1‑131 (MQ=255) tGTCCAACGGCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 6:90396/1‑149 (MQ=12) aaCGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc > 1:284259/1‑114 (MQ=32) aaCGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc < 2:284259/114‑1 (MQ=32) gtccAAACCAATACCG‑‑TTGAAGCCTGCAAGACCCAGGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGTCGGTAATTTCGAGCAACTGAcc < 5:68667/139‑1 (MQ=255) ggCCAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGGTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc < 8:293950/149‑1 (MQ=255) ggCCAAACCATTACAG‑‑TTGAAGACGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCACCTGAcc > 6:68667/1‑141 (MQ=11) gCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 5:34202/1‑89 (MQ=31) gCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 6:34202/89‑1 (MQ=31) ccAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 5:304691/144‑1 (MQ=12) ccAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 6:304691/1‑144 (MQ=12) cAAACGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGATCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 6:113331/1‑149 (MQ=255) aaaCGATTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcc > 2:55759/1‑148 (MQ=255) aaaCCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGATTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAAAccgccg > 4:69192/1‑149 (MQ=11) cATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCgg < 5:313208/149‑1 (MQ=37) aTTACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGc < 5:90396/149‑1 (MQ=12) ttACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCTAATGACGTCTACAACAACTGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt < 3:252330/149‑1 (MQ=255) ttACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt > 2:235435/1‑149 (MQ=37) tACCG‑‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTc > 6:138188/1‑149 (MQ=12) ccG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAg < 7:136955/149‑1 (MQ=37) g‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAc > 7:205260/1‑149 (MQ=37) tGAAGCCGTCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGTCGAAGGACGTCTCCAACACCGGTTCGACTGGCAGCGTCACCATCTAGAACGCCACAGGCGGTAATTTCGAGCAACGGACCCCGAACCCGACCCCGGCTCAGACCa < 2:193594/149‑1 (MQ=11) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCAc > 4:275266/1‑148 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGAt > 1:56761/1‑149 (MQ=37) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATc < 8:205260/149‑1 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCCACAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGCACCCGCCGCCGCCTCAGACCACGATCa > 3:24740/1‑149 (MQ=11) cGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGGAATTTCGAGCAACTGACCCCGAACCCGACACCGGCTCAGACCACGATc > 4:241251/1‑148 (MQ=255) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAc > 2:292717/1‑149 (MQ=38) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAcc < 3:277961/149‑1 (MQ=38) gCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac > 7:264608/1‑147 (MQ=2) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc > 3:65577/1‑149 (MQ=39) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 4:70055/1‑149 (MQ=39) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 7:124687/1‑149 (MQ=39) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 3:70055/149‑1 (MQ=39) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 3:275266/149‑1 (MQ=39) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGa > 3:31484/1‑149 (MQ=39) | TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACC‑GTGACCCTGTCCAACGGCCAAACCATTACCG‑‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGA > NC_002947/197445‑197727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |