Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,405,230 | A→C | 9.8% | H76P (CAC→CCC) | PP_2108 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,405,230 | 0 | A | C | 9.8% | 145.8 / 7.5 | 51 | H76P (CAC→CCC) | PP_2108 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (22/24); new base C (2/3); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
CGCCCCTCGAAGCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACG > NC_002947/2405083‑2405375 | cGCCCCTCGAAGCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCAc > 8:265007/1‑149 (MQ=255) cTCGAAGCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGc > 2:76387/1‑148 (MQ=255) gCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGGAGTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGc < 1:76387/149‑1 (MQ=255) gCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCt > 7:39510/1‑149 (MQ=255) ccAACCTGCAATTACTGTGTGGTGCGCAGCAACAGGTACGTGCGTTGTTTGACTCGCCCATCAACATCAGCAGCGGGTATCTCAGCGAAAGG‑GTCAATCGCTTGATCGGTGCAGCCTCCGATACCCAGCACGTGCAAGGTCTGgcggcg > 8:169020/1‑149 (MQ=255) cAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCCCTTGCACGTGCTggctatcg < 5:70301/149‑6 (MQ=255) cAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGgcggcg > 8:246069/1‑148 (MQ=255) tgCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCa < 7:246069/149‑1 (MQ=255) gcgcTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAg > 6:151646/1‑149 (MQ=255) gAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGt < 6:27293/140‑1 (MQ=255) gAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGt > 5:27293/1‑140 (MQ=255) ggTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCgaga < 5:151646/149‑1 (MQ=255) tGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTcc > 6:184777/1‑149 (MQ=255) gCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCg > 5:75164/1‑149 (MQ=255) gttgttTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAgg > 8:2264/1‑125 (MQ=255) gttgttTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAgg < 7:2264/125‑1 (MQ=255) ttgttTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGc > 5:236423/1‑148 (MQ=255) catcatcatCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTg < 2:209798/149‑1 (MQ=255) atcctcaGCTGCGGGTATCGCAGCTAAAGG‑GTCAAGAGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCACGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGt < 8:268182/149‑1 (MQ=255) atcaGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAg < 6:52291/140‑1 (MQ=255) atcaGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAg > 5:52291/1‑140 (MQ=255) tcaGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGccc > 4:265581/1‑149 (MQ=255) agcagcGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCtt < 2:71537/149‑1 (MQ=255) agcagcGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCt < 7:265007/148‑1 (MQ=255) cagcGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTc > 7:290612/1‑148 (MQ=255) cagcGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCg < 3:169882/149‑1 (MQ=255) gcGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGAt < 6:75164/149‑1 (MQ=255) cGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCga < 3:61157/108‑1 (MQ=255) cGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCga > 4:61157/1‑108 (MQ=255) gTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCg < 6:246630/133‑1 (MQ=255) gTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCg > 5:246630/1‑133 (MQ=255) gTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGc < 6:236423/149‑1 (MQ=255) aGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAAtt < 8:39510/149‑1 (MQ=255) gg‑gTCAATCGGTTGTTCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACCTCACGGTGATCGAGGTCAGCCCTAGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTc < 7:169020/149‑1 (MQ=255) g‑gTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCg < 3:265581/149‑1 (MQ=255) gTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCg > 7:106231/1‑148 (MQ=255) tCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGAc < 5:184777/149‑1 (MQ=255) tCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCg < 7:104236/68‑1 (MQ=255) tCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCg > 8:104236/1‑68 (MQ=255) gTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTc > 6:156889/1‑139 (MQ=255) gTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTc < 5:156889/139‑1 (MQ=255) tCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGc > 4:287703/1‑68 (MQ=255) tCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGc < 3:287703/68‑1 (MQ=255) gTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTg < 8:290612/149‑1 (MQ=255) gccgCCAGCCCTTGCACGTGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGAcgcgc > 7:6636/4‑149 (MQ=255) aTAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGAcgcgc > 2:90052/1‑149 (MQ=255) gCCAGCCCTTGCACGTGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGc < 8:6636/149‑1 (MQ=255) gCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCgg < 1:90052/148‑1 (MQ=255) ccAGCCCTTGCACGTGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCa > 8:58267/1‑149 (MQ=255) cAGCCCTTGCACGTGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCAc < 7:58267/149‑1 (MQ=255) aGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCAcg > 1:176192/1‑149 (MQ=255) | CGCCCCTCGAAGCCAGGGCCAACCTGCAATTACTGTGTGGTGCGCTGGAACAGGTACGTGCGTTGTTTGACGCGCCCATCATCATCAGCAGCGGGTATCGCAGCGAAAGG‑GTCAATCGGTTGATCGGTGGCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACG > NC_002947/2405083‑2405375 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |