| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,433,153 | G→T | 12.6% | R342L (CGG→CTG) | uup → | ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,433,153 | 0 | G | T | 12.6% | 123.5 / 8.2 | 46 | R342L (CGG→CTG) | uup | ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (22/18); new base T (3/3); total (25/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-01 | |||||||||||
GCGAGCGCCGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTATTTCGACCAGAT > NC_002947/2433006‑2433291 | gCGAGCGCCGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCgg < 6:16212/149‑1 (MQ=255) ccGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATc < 8:172766/149‑1 (MQ=255) cGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCCGCTGCAGGacca < 3:229529/149‑4 (MQ=255) cGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCg > 2:130814/1‑149 (MQ=255) tGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCCGCTGCAGGacca > 8:200239/1‑144 (MQ=255) tGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCCGCTGCAGGacca < 7:200239/147‑4 (MQ=255) tGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCa > 1:185359/1‑149 (MQ=255) gACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGt < 4:163776/149‑1 (MQ=255) gCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTctg > 1:293504/1‑141 (MQ=255) gCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTctg < 2:293504/141‑1 (MQ=255) aaCATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCTTGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCaaa < 1:61763/149‑1 (MQ=255) ccAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCa > 5:280882/1‑149 (MQ=255) cGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGc > 4:280748/1‑148 (MQ=255) gAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCaa < 6:280882/149‑1 (MQ=255) aaGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCa < 8:176502/109‑1 (MQ=255) aaGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCa > 7:176502/1‑109 (MQ=255) aaGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGc > 1:259854/1‑146 (MQ=255) aaGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCaa < 2:259854/148‑1 (MQ=255) ccGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGAc > 8:227423/1‑148 (MQ=255) gACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGtt > 7:59358/1‑149 (MQ=255) aTCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTgg > 3:286148/1‑132 (MQ=255) aTCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTgg < 4:286148/132‑1 (MQ=255) aaGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAgatgat > 6:87931/1‑149 (MQ=255) ggTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTgg > 5:180896/1‑149 (MQ=255) gagaATGTCAGCTTCCATCACGCGGACGGCGCCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGc > 1:29177/1‑149 (MQ=255) aCGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAg > 1:213965/1‑149 (MQ=255) gcgGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAgcg > 8:83117/1‑149 (MQ=255) ggACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCg < 2:18672/133‑1 (MQ=255) ggACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCg > 1:18672/1‑133 (MQ=255) ggACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGcgcg > 1:220103/1‑149 (MQ=255) aCGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGc < 6:180896/149‑1 (MQ=255) c‑ccccTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCAcc > 3:37676/1‑148 (MQ=255) c‑ccccTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCAcc > 2:176150/1‑148 (MQ=255) ccccTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCaa < 3:280748/149‑1 (MQ=255) ctgctgGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCt < 2:29177/149‑1 (MQ=255) ctgctgGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCt < 2:213965/149‑1 (MQ=255) ctgGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCtt < 7:227423/147‑1 (MQ=255) ctgGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGa < 1:130814/149‑1 (MQ=255) gTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAg < 8:59358/147‑1 (MQ=255) aaGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGc > 6:29286/1‑149 (MQ=255) cTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTAtt < 1:176150/149‑1 (MQ=255) aTGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTATTTCGAc > 3:117403/1‑147 (MQ=255) tGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCa > 8:103796/1‑123 (MQ=255) tGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTATTTCGACCAg < 5:87931/149‑1 (MQ=255) gatCCTGCCGCTGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGa < 2:283718/82‑1 (MQ=255) gatCCTGCCGCTGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGa > 1:283718/3‑84 (MQ=255) atCCTGCCGCTGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTATTTCGACCAGAt > 5:179840/2‑149 (MQ=255) | GCGAGCGCCGTGAACGACAGGGCAAGGCCAACATCCAGATCGAAGCCGCGGACAAATCCGGCAAGCAGGTGATGGTGCTGGAGAATGTCAGCTTCCATCACGCGGACGGC‑CCCCTGCTGGTCAAGGACTTTTCCATGGTCCTGCAGCGGCAGGATCGCATCGGTCTGCTGGGCGCAAACGGCACTGGCAAGACCACGTTGCTCAAGATGATGCTGGGCGACCTTGAGCCCACTGCGGGCAAAGTGGAGCGCGGCACCAAGCTTGAGGTGGCCTATTTCGACCAGAT > NC_002947/2433006‑2433291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |