Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,635,440 | C→A | 12.5% | intergenic (+30/+87) | PP_2304 → / ← PP_2305 | peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,635,440 | 0 | C | A | 12.5% | 135.3 / 8.7 | 48 | intergenic (+30/+87) | PP_2304/PP_2305 | peptidyl‑prolyl cis‑trans isomerase D/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (21/21); new base A (3/3); total (24/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
CGCCACCGACGAAGAGAAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAGGGC > NC_002947/2635293‑2635586 | cgccACCGACGAAGAGAAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCt < 6:8938/149‑1 (MQ=255) ccACCGACGAAGAGAAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTAGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATCAAGAAACAGGCCGCCTCg > 7:75397/1‑149 (MQ=255) cACCGACGAAGAGAAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGt < 6:132568/149‑1 (MQ=255) gaAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCACGAGGCGGCCTGT‑‑TTc < 7:99138/149‑1 (MQ=255) aaGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCt < 3:268180/143‑1 (MQ=255) aaGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCt > 4:268180/1‑143 (MQ=255) aaGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCg > 6:4500/1‑149 (MQ=255) agcagcAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGt < 6:167625/149‑1 (MQ=255) gcagATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTc < 6:132591/149‑1 (MQ=255) gcagATTCGCCGCTACCTCGCGTCACGTGATGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGATGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTAGT‑TTTc > 4:249346/1‑149 (MQ=255) gATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCTATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGc > 6:245180/1‑148 (MQ=255) gcTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGa < 7:119978/149‑1 (MQ=255) gcgTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTc < 5:102941/149‑1 (MQ=255) gTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCAt > 2:100794/1‑149 (MQ=255) gTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTc > 6:58355/1‑123 (MQ=255) gTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTc < 5:58355/123‑1 (MQ=255) ggCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGt > 2:2978/1‑149 (MQ=255) ccAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGGAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTca < 6:299059/149‑1 (MQ=255) ccAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTca > 3:148796/1‑149 (MQ=255) ggACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACgg < 7:94502/127‑1 (MQ=255) ggACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACgg > 8:94502/1‑127 (MQ=255) ggACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGc < 1:287429/149‑1 (MQ=255) gACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCAACCGTTACTTAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGA‑‑CACCTGTTTCTCCAGCCGCTAGCACGGTCATTGTCTAAGTTCAAAGTga > 1:108390/1‑148 (MQ=255) gACTTTGCAGCTTACCTCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGt < 2:108390/146‑1 (MQ=255) aCCGCAAGCAGCTGGAAGCCTATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTgg < 5:245180/147‑1 (MQ=255) tGGAAGCCAATGCAGACATCACGCGTTACTAAGGTGTTCGTTGAATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGGCAGCCGAGAGCACGGTCATTGTCGATGGTCAAAGAGCCTTCAGCGGTGGGGCTAACCAGGTGc > 8:61568/1‑149 (MQ=255) tGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGTCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGc > 1:256117/1‑149 (MQ=255) taaGCCAATGCAGACATCACCGGTTAATAAGGTGTTCGTTGCATGAATAAACAGGCCGCCTCGTGCGGCCTGTTCTTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTg < 1:100794/147‑1 (MQ=255) aaTGGAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGGCAGCCGCGAGCACGGTCATTGTCGCAGGTCACAGTGCCTTCAGGGGTGGCGCTACCCAGGTGCTACCGCtt > 8:81777/1‑149 (MQ=255) aaTGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCtt < 4:148796/149‑1 (MQ=255) aGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCAccc > 3:268721/1‑149 (MQ=255) gACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCAcccc > 5:323839/1‑149 (MQ=255) aTCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCtt > 2:138869/1‑148 (MQ=255) aCCCGTTTCTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCGGCGAGCACGGTGATTGTCGAAGGTCACAGTGCCTTCAGGTGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCAt < 8:252350/148‑1 (MQ=255) cGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACt < 3:249346/149‑1 (MQ=255) cGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACt < 1:138869/149‑1 (MQ=255) gTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGt > 7:98972/1‑149 (MQ=255) cATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATa < 8:56171/126‑1 (MQ=255) cATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATa > 7:56171/1‑126 (MQ=255) aTGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGATACCGCTTCACCCATTCATAACTGTCCAGCGTATCGCGTGCaa > 2:134399/1‑148 (MQ=255) cgaaACAGGCCGCACGAGGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGACGGTCACAGTGCCTTCAGGGGTGGCGCTAAGCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGt < 7:57819/139‑1 (MQ=255) cgaaACAGGCCGCACGAGGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCAATCGTATCGCGt > 8:57819/2‑140 (MQ=255) agaaACAGGCCGGCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAAtctct < 2:256117/149‑1 (MQ=255) gaaACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAAtctctc > 7:195967/1‑149 (MQ=255) gaaACAGGCCGCACGAGGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATaa < 6:321821/121‑1 (MQ=255) gaaACAGGCCGCACGAGGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATaa > 5:321821/1‑121 (MQ=255) gaaACAGGCCGCACGAGGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAAtctctc > 7:175268/1‑149 (MQ=255) cAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGccc < 4:268721/149‑1 (MQ=255) ccgccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAgg > 5:265903/1‑149 (MQ=255) cgccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTGACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAggg < 8:75397/149‑1 (MQ=255) cgccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACt > 3:246929/1‑114 (MQ=255) cgccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACt < 4:246929/114‑1 (MQ=255) cgccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAggg < 6:265903/149‑1 (MQ=255) gccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAGGGc > 5:207550/1‑149 (MQ=255) ccTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAGGGc > 4:82149/1‑148 (MQ=255) | CGCCACCGACGAAGAGAAGCAGCAGATTCGCCGCTACCTCGCGTCACGTGCTGGCCAGCAGGACTTTGCCGCTTACCGCAAGCAGCTGGAAGCCAATGCAGACATCACCCGTTACTAAGGTGTTCGTTGCATGAAGAAACAGGCCGCCTCGTGCGGCCTGT‑‑TTCGT‑TTTCGCCAGCCGCGAGCACGGTCATTGTCGAAGGTCACAGTGCCTTCAGGGGTGGCGCTAACCAGGTGCTACCGCTTCACCCCTTCATAACTGTCCAGCGTATCGCGTGCAATCTCTCGCCCCAGGGC > NC_002947/2635293‑2635586 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |