| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 206,064 | T→A | 5.8% | L3857Q (CTG→CAG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 206,064 | 0 | T | A | 5.8% | 267.9 / 4.4 | 86 | L3857Q (CTG→CAG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (40/41); new base A (3/2); total (43/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.08e-01 | |||||||||||
GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACG > NC_002947/205920‑206210 | gCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGTCGACCTGGTCAAGGTCACCATCACAGCCGACCATACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTc < 2:187952/149‑1 (MQ=255) aCGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGt < 3:98877/149‑1 (MQ=39) gTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGa > 6:164244/1‑149 (MQ=39) ggTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGAccc > 6:9267/1‑149 (MQ=39) cgacgaGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGc > 5:102224/1‑148 (MQ=39) aGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGccc < 6:140061/149‑1 (MQ=255) aGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGcc > 7:92026/1‑148 (MQ=255) aCGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGc < 3:238399/135‑1 (MQ=40) aCGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGc > 4:238399/1‑135 (MQ=40) gCCTGGCAACGAAGGCTACCTTGTCAAGGTCACCATCACAGCGGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCg < 8:180567/122‑1 (MQ=255) gCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCg > 7:180567/1‑122 (MQ=40) cGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCAc > 4:298474/1‑148 (MQ=40) aaCGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCCCCGTCCACGTAAACCCGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCaa > 6:321770/1‑149 (MQ=255) aaCGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGcc < 4:90906/135‑1 (MQ=40) aaCGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGcc > 3:90906/1‑135 (MQ=40) aCGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAg < 8:223430/149‑1 (MQ=39) cGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGG‑TCACGACCAGGTCGTGAgcc < 2:138350/118‑1 (MQ=255) cGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGG‑TCACGACCAGGTCGTGAgcc > 1:138350/1‑118 (MQ=255) gACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGc > 5:314278/1‑147 (MQ=39) gACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCga < 3:212106/149‑1 (MQ=39) cTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGAc < 6:48627/149‑1 (MQ=255) tCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAgc < 4:285631/149‑1 (MQ=255) cACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCga > 7:227626/1‑135 (MQ=40) cACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCga < 8:227626/135‑1 (MQ=40) aCCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCAt < 5:9267/148‑1 (MQ=255) ccATCACAGCCGACCAGACTTCGGTGGCCGAGAACGGCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATac < 4:83852/149‑1 (MQ=255) caGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCAc < 5:164244/149‑1 (MQ=255) aGCCGACCAGACTTCGGTGGCAGAGAACGTAAAACCGATCTTCACCGAGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACg > 8:303170/1‑149 (MQ=255) ccGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCt > 1:86893/1‑149 (MQ=255) cAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCga > 5:333323/1‑119 (MQ=39) cAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCga < 6:333323/119‑1 (MQ=39) gACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAg < 6:102224/149‑1 (MQ=255) ttCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGc > 4:264763/1‑148 (MQ=255) tGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCGCGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGAc < 4:103128/149‑1 (MQ=255) cGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCAc > 3:201246/1‑127 (MQ=255) cGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCAc < 4:201246/127‑1 (MQ=255) gagaACGTAAAACCCTTCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACTACGTGGGGGTCACCCTTAGCAACAACGCCCCGGACACAATCAAGGCCGGCGACACCAGCGCGCAATACACCCAGGATGCGCACGGCGATGACTTCTa < 2:86893/149‑1 (MQ=255) agaACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCa > 3:194259/1‑124 (MQ=255) agaACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCa < 4:194259/124‑1 (MQ=255) aCGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACaa < 8:92026/148‑1 (MQ=255) cGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAacg > 3:114983/1‑149 (MQ=255) tCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATc < 2:290302/86‑1 (MQ=255) tCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATc > 1:290302/1‑86 (MQ=255) aaaCCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGc > 2:51940/1‑149 (MQ=255) aCCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTg > 5:56341/1‑149 (MQ=40) aCCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTg > 8:270606/1‑149 (MQ=40) cGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGc > 2:112833/1‑149 (MQ=39) cGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCAGACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGc > 2:237752/1‑149 (MQ=255) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa > 5:186957/1‑63 (MQ=35) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa > 5:182457/1‑63 (MQ=35) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa < 6:182457/63‑1 (MQ=35) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCa < 6:186957/63‑1 (MQ=35) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCATGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGc < 7:270606/142‑1 (MQ=37) cACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGa < 6:56341/146‑1 (MQ=37) aCCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAg < 3:264763/149‑1 (MQ=37) aCCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAg > 6:261270/1‑149 (MQ=37) ccGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTGTACAACGACGCTGGCCAGATCAGc < 5:321770/149‑1 (MQ=37) ccGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGc < 1:112833/149‑1 (MQ=37) cGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGcc > 6:77213/1‑149 (MQ=37) cACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTg > 2:150249/1‑147 (MQ=37) cACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTg < 1:150249/147‑1 (MQ=37) cGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACGACGACGCTGGCCAGATCAGCCTGGGCa < 6:11737/149‑1 (MQ=37) gTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCaa < 3:242717/105‑1 (MQ=38) gTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCaa > 4:242717/1‑105 (MQ=38) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCa < 2:179216/148‑1 (MQ=34) cAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTc > 6:140343/1‑149 (MQ=34) aGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTct > 1:36958/1‑149 (MQ=35) gggtCACGACCAGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCtgtg > 1:216190/4‑148 (MQ=25) gggtCACGACCAGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCtgtg < 2:216190/145‑1 (MQ=25) ggtCACGACCAGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGa > 2:108460/3‑149 (MQ=25) gCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTgg > 4:11810/1‑148 (MQ=37) gCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTgg < 3:11810/148‑1 (MQ=37) gCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTgg < 3:298474/148‑1 (MQ=37) tCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCa > 7:73575/1‑122 (MQ=33) tCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCa < 8:73575/122‑1 (MQ=33) tCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATg > 7:230624/1‑149 (MQ=35) tCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATg > 2:270665/1‑149 (MQ=35) cACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCTCCATACACCCACGCTGCGCAATGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGt < 7:303170/149‑1 (MQ=21) aCGACCTGGTCGTGACCCTGAGTAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTa > 5:257221/1‑149 (MQ=21) aCGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAgg < 7:103072/88‑1 (MQ=33) aCGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAgg > 8:103072/1‑88 (MQ=33) aCGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGt < 5:77213/148‑1 (MQ=34) cGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAg < 6:314278/149‑1 (MQ=34) aCCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTg > 6:195537/1‑122 (MQ=32) aCCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTg < 5:195537/122‑1 (MQ=32) ccTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACg > 7:81434/1‑149 (MQ=34) | GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCTGCTGTGGATGTAGACG > NC_002947/205920‑206210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |