Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,079,644 | G→C | 10.4% | intergenic (‑379/+55) | PP_2688 ← / ← PP_2689 | hypothetical protein/endoribonuclease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,079,644 | 0 | G | C | 10.4% | 139.1 / 7.7 | 48 | intergenic (‑379/+55) | PP_2688/PP_2689 | hypothetical protein/endoribonuclease |
Reads supporting (aligned to +/- strand): ref base G (22/21); new base C (3/2); total (25/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.44e-01 |
GGGCCGGCGCATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTGGGGTAGGGTGCCTG > NC_002947/3079498‑3079791 | gggCCGGCGCATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATGCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCgcgggc < 7:86973/149‑1 (MQ=255) cGGCGCATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCa > 8:4315/1‑149 (MQ=255) cGGCGCATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCa > 5:269129/1‑149 (MQ=255) cATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGa < 7:194621/149‑1 (MQ=255) aTCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACt > 3:131342/1‑145 (MQ=255) aTCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACt < 4:131342/145‑1 (MQ=255) aTCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGAt > 2:86898/1‑149 (MQ=255) aTCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGAt > 1:38364/1‑149 (MQ=255) cAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTg > 1:130115/1‑149 (MQ=255) cAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTg > 8:42667/1‑149 (MQ=255) aaaaaGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTgcg > 5:27161/1‑149 (MQ=255) aaaaGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTgcgc < 6:269129/149‑1 (MQ=255) aCCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGATTATCg > 1:280142/1‑149 (MQ=255) aCCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCg < 7:290266/149‑1 (MQ=255) cccGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGt > 5:59614/1‑149 (MQ=255) cccGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGt < 3:56418/149‑1 (MQ=255) cccGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGt < 5:124831/149‑1 (MQ=255) ccGGGCGCGGCTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTg < 8:152355/149‑1 (MQ=255) cGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTga < 7:42667/149‑1 (MQ=255) cGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGc < 6:27161/149‑1 (MQ=255) ggggCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCgcgg > 2:84272/1‑90 (MQ=255) ggggCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCgcgg < 1:84272/90‑1 (MQ=255) gggCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCaga < 1:131749/148‑1 (MQ=255) gcAGGCCGGTGCCTGGAGGGAGAAAAAGCGAGTATTCCGGGTGCATGACGTGCGGAGGAGGGGGCATGCATCTAGCCCCGCGAGGGCGGCACACGATTGCGCGAACGCTCAATATCTTGAGA‑CGGGCGCCTTCAGCGCGTCAGaggcag > 7:294660/1‑149 (MQ=255) aGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGaggcaggc < 4:247864/149‑1 (MQ=255) aGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGaggcaggc > 4:103713/1‑149 (MQ=255) aGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGaggcaggc < 2:192161/149‑1 (MQ=255) ccTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGaccac < 1:86898/149‑1 (MQ=255) gagaAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTcca > 2:21745/1‑149 (MQ=255) aaaGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGc < 6:59614/149‑1 (MQ=255) ggAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAat > 5:109671/1‑85 (MQ=255) ggAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAat < 6:109671/85‑1 (MQ=255) gAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATttc < 1:238643/149‑1 (MQ=255) aTTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTcc > 6:6548/1‑149 (MQ=255) gTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGt > 4:212271/1‑78 (MQ=255) gACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGgccag > 8:199847/1‑149 (MQ=255) gTGGGGCGGAGGGGGCATGCATCGAGTGCCGCCCGCGCGGCGCt > 6:158120/1‑44 (MQ=17) gTGGGGCGGAGGGGGCATGCATCGAGTGCCGCCCGCGCGGCGCt < 5:158120/44‑1 (MQ=17) gggCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGccacc < 2:130115/148‑1 (MQ=255) ggAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTAc > 8:31844/1‑149 (MQ=255) ggggCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGGCAGAGGCAGTCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGACGCCAGCCACCACTACGGcc < 1:78216/149‑1 (MQ=255) gcatgcatCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCcgcg < 7:31844/149‑1 (MQ=255) cgcaatCGAGTGCCGCCCGCGCGGCGCTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCcgcgcg > 2:115122/5‑149 (MQ=255) atgcatCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGCCCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCCCTACGGCcgcgcg > 7:18498/1‑149 (MQ=255) atgcatCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCcgcgcg < 1:21745/149‑1 (MQ=255) aatCGAGTGCCGCCCGCGCGGCGCTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAg > 7:229075/2‑122 (MQ=255) aatCGAGTGCCGCCCGCGCGGCGCTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAg < 8:229075/121‑1 (MQ=255) cGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGAGCGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTgg > 1:241725/1‑149 (MQ=255) gAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTggg < 2:38364/148‑1 (MQ=255) aGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTgggg > 1:63530/1‑148 (MQ=255) gcgcgGGCGGCACTCGATTGCGCGATCGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTGGGGTAGGGTg > 3:148736/1‑149 (MQ=255) gggcggCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGGCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTGGGGTAGGGTGCCTg < 5:6548/149‑1 (MQ=255) | GGGCCGGCGCATCAAAAAAGGGCGCTTTTGACCCGGGCGCGGGTTTTGAACCGAAATGGGGCGCAGGCCGGTGCCTGGCGGGAGAAAAAGGGAGTATTCCGGGTGCATGACGTGGGGCGGAGGGGGCATGCATCGAGCGCCGCGCGGGCGGCACTCGATTGCGCGAACGCTGAATATCGTGAGA‑CGGGCGCCTTCAGGGCGTCAGAGGCAGGCGTAGACCACCAGTTCCACCAGCATTTCTTCCCGGGCGAGGCCAGCCACCACTACGGCCGCGCGGTTGGGGTAGGGTGCCTG > NC_002947/3079498‑3079791 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |