Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,667,253 | G→C | 9.6% | intergenic (+196/+66) | PP_3230 → / ← PP_3231 | phosphoribosyl transferase domain‑containing protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,667,253 | 0 | G | C | 9.6% | 152.0 / 7.0 | 53 | intergenic (+196/+66) | PP_3230/PP_3231 | phosphoribosyl transferase domain‑containing protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (22/24); new base C (2/3); total (25/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.12e-01 |
CTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGCAAGGGCAGGGCAGTCACCGGCCGGGT > NC_002947/3667107‑3667399 | cTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCt > 1:201783/1‑149 (MQ=255) gTGGCGGGCGTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAGCGCCGCGGCCTTCGc < 1:311772/149‑1 (MQ=255) gTGGCGGGCGTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGc > 2:220274/1‑149 (MQ=255) gcgggcgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCg < 2:102926/148‑1 (MQ=255) gggcgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAGCGCCGCGGCCTTCGccaa > 7:207869/1‑145 (MQ=255) gggcgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAGCGCCGCGGCCTTCGccaa < 8:207869/147‑3 (MQ=255) gggcgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGt > 5:86463/1‑148 (MQ=255) ggcgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAGCGCCGCGGCCTTCGccaaggt < 2:100775/149‑6 (MQ=255) cgTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACt < 6:222339/149‑1 (MQ=255) gTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGTTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTg < 1:75652/149‑1 (MQ=255) gTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTg < 6:68502/149‑1 (MQ=255) cTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGt > 4:5566/1‑149 (MQ=255) gAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTc > 2:178548/1‑149 (MQ=255) aGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTc < 2:201783/148‑1 (MQ=255) gcgcCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGt > 6:137054/1‑149 (MQ=255) cGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGt < 3:45168/149‑1 (MQ=255) caatcaatACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAc < 3:5566/149‑1 (MQ=255) aatcaatACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAcc > 3:229195/1‑149 (MQ=255) cAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATc > 6:243346/1‑149 (MQ=255) aGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATcc < 5:137054/149‑1 (MQ=255) aCGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGt > 5:60908/1‑149 (MQ=255) gcgGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATggg > 3:276661/1‑149 (MQ=255) cgGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATgggg < 6:86463/149‑1 (MQ=255) aCGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAc > 3:78343/1‑119 (MQ=255) aCGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAc < 4:78343/119‑1 (MQ=255) aCGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAgc < 3:73789/126‑1 (MQ=255) aCGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAgc > 4:73789/1‑126 (MQ=255) tCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATa < 3:131180/149‑1 (MQ=255) tactCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATacac > 3:114322/1‑148 (MQ=255) ctTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAAt > 8:289750/1‑149 (MQ=255) ttCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCaaa < 2:81095/147‑1 (MQ=255) gctgAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGtt > 3:27201/1‑149 (MQ=255) ctgAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTTGCACCTTGGCGAAGGCCGCGGCACTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGttt > 1:219434/1‑149 (MQ=255) ctgAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGttt < 4:114322/149‑1 (MQ=255) tgAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTc > 1:174803/1‑149 (MQ=255) cTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTcc < 4:229195/149‑1 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAcc < 5:317089/81‑1 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTAcc > 6:317089/1‑81 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACAcc < 8:270733/127‑1 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACAcc > 7:270733/1‑127 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCctct > 7:314/1‑149 (MQ=255) aaTCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCctc < 6:60908/148‑1 (MQ=255) tCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTgg < 5:243346/149‑1 (MQ=255) gTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCt > 8:92901/1‑149 (MQ=255) gTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGt < 7:291421/130‑1 (MQ=255) gTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGt > 8:291421/1‑130 (MQ=255) ccGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCtg < 1:178548/149‑1 (MQ=255) cGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCtgt > 4:156000/1‑149 (MQ=255) aaGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGTATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTc < 1:220274/149‑1 (MQ=255) agagCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCg < 7:92901/149‑1 (MQ=255) agCCTGGCACCTTGGCGAAGGCCGCGGCACTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGc < 2:219434/149‑1 (MQ=255) ccTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGCaa < 3:145793/149‑1 (MQ=255) caccggCGAGCGCCGCGGCCTTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTCATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCGCTGGCTCAAGATGCTGTTGGTTCGGAAagggcagg > 6:304352/5‑149 (MQ=255) cggcgCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGCAAGGGCAGGGCAGTCAccggccgg < 8:314/149‑1 (MQ=255) gcgcTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGCAAGGGCAGGGCAGTCACCGGCCGGGt < 7:289750/149‑1 (MQ=255) | CTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATACGTAGCAGACGCTCTCGCGGCACGTGGCCTAAGGTCACTACTCTTCGACCTGCTGAGCTCAATCGTCAGGTGGACCGCTCGAAGAGCCTGGCACCTTGGCGAAGGCCGCGGCGCTCGCCGGTGACTGGTTCGTGAAGTACCTGCAGCGCATATCCGTCTGATGGGGCTTGGCCGAGGCTCATACACCAAATGGATAGGTTTCGTCCTCTGGCTCAAGATGCTGTTGTTTCGGCAAGGGCAGGGCAGTCACCGGCCGGGT > NC_002947/3667107‑3667399 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |