Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,741,011 | G→T | 7.2% | L308M (CTG→ATG) ‡ | PP_3305 ← | TerC family membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,741,011 | 0 | G | T | 7.2% | 162.0 / 3.8 | 56 | L308M (CTG→ATG) ‡ | PP_3305 | TerC family membrane protein |
Reads supporting (aligned to +/- strand): ref base G (26/26); new base T (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.95e-01 |
CAGCGGAGGCGACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCATGGCAGCCAATGCAA > NC_002947/3740867‑3741154 | cagcGGAGGCGACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAATCAACACGCCGCCAATCAGAAgg > 1:220786/1‑146 (MQ=255) ggCGACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTaa > 7:129809/1‑149 (MQ=255) ggCGACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTaa < 7:225299/149‑1 (MQ=255) gACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGc > 8:256538/1‑149 (MQ=255) gACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGc > 2:241992/1‑149 (MQ=255) cGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGTGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCGGCCTGCTGATTggcg < 8:270505/143‑4 (MQ=255) cGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCGGCCTGCTGATTggcggaga > 7:270505/1‑140 (MQ=255) tttCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCGGCCTGCTGATTggcg > 1:130186/1‑137 (MQ=255) tttCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCGGCCTGCTGATTggcg < 2:130186/140‑4 (MQ=255) tCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGa > 8:133070/1‑148 (MQ=255) gCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAAt > 7:36333/1‑135 (MQ=255) gCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAAt < 8:36333/135‑1 (MQ=255) gAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGCCCCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCATACAGCAGGCCGATTGTAATCATCAACGATATTTCgcat > 2:10146/1‑146 (MQ=255) gAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCgg < 6:15221/147‑1 (MQ=255) aTCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTg < 7:133070/148‑1 (MQ=255) ggCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACtt < 3:55893/148‑1 (MQ=255) gATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTAcc < 8:129809/149‑1 (MQ=255) gATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTAcc < 3:144402/149‑1 (MQ=255) gTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAAt > 6:283592/1‑149 (MQ=255) cgcgCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCca < 4:158371/140‑1 (MQ=255) cgcgCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCca > 3:158371/1‑140 (MQ=255) gcgcTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCAt > 4:251052/1‑148 (MQ=255) gcTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGaa < 3:251052/149‑1 (MQ=255) gcagcaGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACACACAATGTAATGAAGGaaaa > 8:268308/1‑149 (MQ=255) agccagaGTCCGTAATTATTCAAGAACCATTAGCGGAAGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCATCAGGCCGATTGTAATCCTCAACTATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTc < 2:220786/149‑1 (MQ=255) ccagcGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTGTACCCACAATGTCATGAAGGAAAATTTTc > 6:35627/1‑147 (MQ=255) gcGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGcc > 1:189589/1‑149 (MQ=255) gCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGAt < 5:31028/149‑1 (MQ=255) gCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGAt < 5:35755/149‑1 (MQ=255) ttattCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACa < 7:256538/149‑1 (MQ=255) aagaagCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCAcc < 2:61361/149‑1 (MQ=255) aagaagCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCAc > 3:275309/1‑148 (MQ=255) aagaagCATTAGCGGACGCTAGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCAcc < 7:39615/149‑1 (MQ=255) ttAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCATCGCCAg > 7:124818/1‑149 (MQ=255) gACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCata < 1:10146/149‑1 (MQ=255) aCGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCatat < 4:275309/149‑1 (MQ=255) aCGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCatat > 6:250089/1‑149 (MQ=255) tCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATAttt > 5:293595/1‑147 (MQ=255) tCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGAATAttt > 8:129565/1‑147 (MQ=255) gggTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAgg > 1:225319/1‑149 (MQ=255) ggTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGt < 5:283592/149‑1 (MQ=255) gatttCCAAACCGAAAGCAACACCCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTa < 8:124818/147‑1 (MQ=255) gTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTa < 6:293595/149‑1 (MQ=255) ttttCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTa > 2:10479/1‑148 (MQ=255) aaaGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAg > 2:232451/1‑149 (MQ=255) gCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCa < 8:197256/114‑1 (MQ=255) gCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCa > 7:197256/1‑114 (MQ=255) gaaagaaaCAAGCCGCCAATCAGCAGGCCTATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGTAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGAc < 7:268308/148‑1 (MQ=255) gAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACt > 3:258913/1‑149 (MQ=255) aGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGa > 3:261978/1‑148 (MQ=255) aaCACGCCTCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGTCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAgg < 5:75539/129‑1 (MQ=255) aaCACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCAt < 6:24108/149‑1 (MQ=255) aaCACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCAt > 8:82898/1‑149 (MQ=255) acacGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCATg > 5:108888/1‑149 (MQ=255) cacGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAAc > 6:51486/1‑132 (MQ=255) cacGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAAc < 5:51486/132‑1 (MQ=255) cAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCATGGCAGCCAAt < 2:225319/149‑1 (MQ=255) agcagGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAg < 6:15762/123‑1 (MQ=255) agcagGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCATGGCAGCCAATGCaa < 6:108888/148‑1 (MQ=255) | CAGCGGAGGCGACCGCTTTCACGCCTTGAATCCTAGGCGATCCGGTCATCGCGCTCACGCAGCAGCCAGCGGCCGTAATTATTCAAGAAGCATTAGCGGACGCTCGGGTTTTCCAAAGCGAAAGCAACACGCCGCCAATCAGCAGGCCGATTGTAATGCTCAACGATATTTCGGCTGGCACTTTACCCACAATGTCATGAAGGAAAATTTTCGAGCCGATAAAGACAAGCACCAGAGCCAGCGCATATTTAAGGTAAACAAAGCGACTGATCATGGCAGCCAATGCAA > NC_002947/3740867‑3741154 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |