Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,932,050 | C→G | 9.3% | G476A (GGC→GCC) | PP_3466 ← | ABC transporter permease/ATP‑binding protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,932,050 | 0 | C | G | 9.3% | 159.4 / 7.5 | 54 | G476A (GGC→GCC) | PP_3466 | ABC transporter permease/ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (23/26); new base G (3/2); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.63e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 |
GATGGCCGCGATCACTTCACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAGGGTGCCACGGAACAACAC > NC_002947/3931905‑3932192 | gATGGCCGCGATCACTTCACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCa < 2:2813/149‑1 (MQ=255) tGGCCGCGATCACTTCACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAg > 6:30037/1‑148 (MQ=255) cgcgATCACTTCACTCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGc < 4:302279/149‑1 (MQ=255) aTCACTTCCCCCTCGGTGGCCTCATCCACTGCCGAACTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGATCGCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCAt < 1:83834/149‑1 (MQ=255) cTTCACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAgg > 3:215732/1‑149 (MQ=255) cACGCTCGGTGGCCTCATCCACTGCCGCAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGc < 4:1299/147‑1 (MQ=255) cACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGcc < 5:30037/148‑1 (MQ=255) cACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGc < 8:295141/147‑1 (MQ=255) gCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGTATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGc > 1:233219/1‑149 (MQ=255) gCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGGCGAGCGCGGCCAGCagttgt > 6:176253/1‑132 (MQ=255) gCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGGCGAGCGCGGCCAGCagttgt < 5:176253/137‑6 (MQ=255) gCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGc > 6:42928/1‑144 (MQ=255) gCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGc < 5:42928/144‑1 (MQ=255) cTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGt > 5:29471/1‑149 (MQ=255) tCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCACGCCATCCAGGCCCAGCGGCAGGCTGTc > 1:303532/1‑149 (MQ=255) tCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTc > 7:510/1‑149 (MQ=255) aTCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTc < 2:245904/147‑1 (MQ=255) cACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCa < 2:55329/149‑1 (MQ=255) ccGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGAACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCCGGCTg > 7:113111/1‑149 (MQ=255) cGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGt < 5:144417/149‑1 (MQ=255) aaGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTcc < 8:510/149‑1 (MQ=255) aaGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTc > 3:65718/1‑148 (MQ=255) tGGCCTCGTCCAGCGCCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGCCTGTCCAGc > 5:43328/1‑149 (MQ=255) ccTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCcgc > 7:195465/1‑149 (MQ=255) cTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCcgcg > 7:277804/1‑149 (MQ=255) gTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCgcgc < 6:29471/147‑1 (MQ=255) ccAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGcacc > 5:329103/1‑149 (MQ=255) ccAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGcac > 5:329105/1‑148 (MQ=255) cAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGcacca > 5:119714/1‑149 (MQ=255) aGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGGGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGcaccac < 6:43328/149‑1 (MQ=255) aGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGcaccac < 3:190400/149‑1 (MQ=255) aaCACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTc > 4:292948/1‑110 (MQ=255) aaCACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTc < 3:292948/110‑1 (MQ=255) cTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCgcgc > 6:328498/1‑115 (MQ=255) cTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCgcgc < 5:328498/115‑1 (MQ=255) gCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGc > 2:29860/1‑149 (MQ=255) cACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGc > 4:189907/1‑148 (MQ=255) aGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCgg < 4:65718/149‑1 (MQ=255) gAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCa > 2:173327/1‑148 (MQ=255) gAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCAt < 1:173327/149‑1 (MQ=255) ttgttTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGc > 6:90076/1‑147 (MQ=255) ttgttTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCa < 3:189907/149‑1 (MQ=255) tGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTg > 5:207783/1‑149 (MQ=255) gCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTgc < 2:233219/148‑1 (MQ=255) gCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTg < 8:277804/147‑1 (MQ=255) ccccGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTc > 2:181115/1‑100 (MQ=255) ccccGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTc < 1:181115/100‑1 (MQ=255) cGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAgg < 6:329103/149‑1 (MQ=255) cGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAgg < 6:329105/149‑1 (MQ=255) gcttgctgGGCGAGCGCGGCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCa > 2:202709/4‑123 (MQ=255) gcttgctgGGCGAGCGCGGCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCa < 1:202709/120‑1 (MQ=255) tgctgGGCGAGCGCGGCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAGGGTGCCACg > 3:28733/1‑149 (MQ=255) gcgcTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAGGGTGCCACGGAacaaca < 1:29860/149‑1 (MQ=255) cgcTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAGGGTGCCACGGAACAacac < 7:263079/149‑1 (MQ=255) | GATGGCCGCGATCACTTCACGCTCGGTGGCCTCATCCACTGCCGAAGTGGCCTCGTCCAGCACCAGGATCGCCGGGGCCTGCAACACTGCACGAGCAATGGCGAT‑GCGTTGTTTCTGGCCCCCGGACAACTGCTGGCCGCGCTCGCCCAGCAAGCCATCCAGGCCCAGCGGCAGGCTGTCGACCAGGCTGTCCAGCCGCGCCAGGCGCACCACCCGTTCCAGTTCATCACGGCTGGCCTCGGGCACGCCATAAGCCAGGTTCTGCGCCAGGGTGCCACGGAACAACAC > NC_002947/3931905‑3932192 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |