Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,063,001 | C→G | 9.4% | E446D (GAG→GAC) ‡ | PP_3581 ← | membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,063,001 | 0 | C | G | 9.4% | 161.9 / 7.3 | 53 | E446D (GAG→GAC) ‡ | PP_3581 | membrane protein |
Reads supporting (aligned to +/- strand): ref base C (22/26); new base G (3/2); total (25/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 |
GCCCGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCGTGCTG > NC_002947/4062853‑4063147 | gCCCGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCgctgc > 3:25617/1‑149 (MQ=255) cccGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCgctgct > 4:69195/1‑149 (MQ=255) cccGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCgctgct > 8:192594/1‑149 (MQ=255) ccGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTc < 7:192594/149‑1 (MQ=255) cGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTc > 5:289724/1‑148 (MQ=255) tCTTTTCCGCCAGGCCGATGAAGCGGTCGGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAgc < 7:142203/149‑1 (MQ=255) ttttCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAgcgc > 7:105648/1‑149 (MQ=255) gCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGGAGCAGCGCCa < 6:100974/145‑1 (MQ=255) gCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGGAGCAGCGCCa > 5:100974/1‑145 (MQ=255) gCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGgcg > 4:132142/1‑149 (MQ=255) ccAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGgcgc < 6:324495/149‑1 (MQ=255) ggCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAAGTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAg < 2:253835/149‑1 (MQ=255) aTGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTg < 3:132142/149‑1 (MQ=255) aaGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTgca < 6:289724/148‑1 (MQ=255) cGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGcagcag > 5:207289/1‑149 (MQ=255) gcagcagcaGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAAc > 2:88095/1‑149 (MQ=255) gcagcagcaGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAAc > 7:134949/1‑149 (MQ=255) cccgcagcagGGCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAAc > 5:315798/4‑149 (MQ=255) agcagcagGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAActg < 8:134949/149‑1 (MQ=255) agcagGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAActgctg > 4:73956/1‑149 (MQ=255) cagGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGgcg < 5:107256/120‑1 (MQ=255) cagGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGgcg > 6:107256/1‑120 (MQ=255) cagGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGgc < 7:294709/149‑1 (MQ=255) ggCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGgcgc < 6:207289/149‑1 (MQ=255) gCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGgcgcg < 6:256898/149‑1 (MQ=255) cccTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGgcgcgc < 8:105648/149‑1 (MQ=255) tCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGGAGCAGCGCCa > 4:177597/1‑97 (MQ=255) tCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGGAGCAGCGCCa < 3:177597/97‑1 (MQ=255) ccAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGaca < 3:73956/149‑1 (MQ=255) aGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATc > 4:35072/1‑143 (MQ=255) aGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATc < 3:35072/143‑1 (MQ=255) gcgcAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACAt > 5:78323/1‑149 (MQ=255) cgcAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATc < 3:69195/149‑1 (MQ=255) cagcaACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCga < 6:315798/149‑1 (MQ=255) agcaACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCgaa < 6:155704/149‑1 (MQ=255) aaCGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCgaag > 5:25944/1‑147 (MQ=255) aCGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGaagaag < 4:25617/149‑1 (MQ=255) cGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGTAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGt < 1:88095/147‑1 (MQ=255) aTCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGGAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGGGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAAGCGTTCtt < 4:104761/149‑1 (MQ=255) gTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCg > 8:47651/1‑149 (MQ=255) tGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCAt > 4:313313/1‑94 (MQ=255) tGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCAt < 3:313313/94‑1 (MQ=255) cGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGt < 7:151591/96‑1 (MQ=255) cGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGt > 8:151591/1‑96 (MQ=255) cGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATgg < 7:47651/149‑1 (MQ=255) gTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGt < 6:25944/149‑1 (MQ=255) tCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGt > 1:1693/1‑148 (MQ=255) aCTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATg < 6:78323/149‑1 (MQ=255) gTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCgg > 4:208604/1‑149 (MQ=255) gCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTa > 3:284662/1‑149 (MQ=255) gCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTa > 2:70482/1‑149 (MQ=255) cAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTa < 2:1693/148‑1 (MQ=255) aGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACg > 4:279752/1‑148 (MQ=255) aGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACg > 7:8829/1‑148 (MQ=255) cTGGCGCTGGAGCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCt > 5:143619/1‑149 (MQ=255) ggCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCg > 2:208899/1‑149 (MQ=255) gctgctCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCGTGc > 2:53587/1‑149 (MQ=255) ctgctCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCGTGCt > 8:139936/1‑149 (MQ=255) ctCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCGTGCTg < 3:208604/147‑1 (MQ=255) | GCCCGGTCTTTTCCGCCAGGCCGATGAAGCGGTCAGGCAGCAGCAGGCCCTGCTGCGGGTGCTCCCAGCGCAGCAACGCTTCGGCACCGATCGGTTGGCAGGCCTGGGCGTCGAACTTGGGCTGGTAATGCAAGCGGAACTGGCGCTGCTCCAGCGCCAGGCGCAAGTCCTGCAGCAGCTGCAACTGCTGGCGCGCATTGCTGTTCATCGACACATCGAAGAAGCTGTAACCGTTCTTGCCGGCGCTTTTGGCATGGTACATGGCAGCGTCGGCGTTACGCAGCAGCTCGTGCTG > NC_002947/4062853‑4063147 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |