Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,183,620 | A→C | 8.6% | P466P (CCA→CCC) | PP_3680 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,183,620 | 0 | A | C | 8.6% | 138.0 / 3.6 | 46 | P466P (CCA→CCC) | PP_3680 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (25/17); new base C (2/2); total (27/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
GTTCGAGAAGCCGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTATTCGAC > NC_002947/4183474‑4183767 | gttcgAGAAGCCGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCAc > 1:260230/1‑148 (MQ=255) gagaAGCCGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAggg > 2:163321/1‑149 (MQ=255) aGCCGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGgc < 2:260230/149‑1 (MQ=255) ccGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGgcgc > 3:111075/1‑149 (MQ=255) ccGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGgcgc > 3:106494/1‑149 (MQ=255) gTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCCCCCCTAGTGGAgcgatc > 1:313678/1‑146 (MQ=255) gTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCCCCCCTAGTGGAgcgatc < 2:313678/149‑4 (MQ=255) gCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCaa > 4:250736/1‑149 (MQ=255) cGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCt < 3:250736/149‑1 (MQ=255) ctctACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTggc < 8:62271/148‑1 (MQ=255) gCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGaa > 3:88572/1‑149 (MQ=255) tggtACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGt < 1:163321/149‑1 (MQ=255) tACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTc < 1:145440/113‑1 (MQ=255) tACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTc > 2:145440/1‑113 (MQ=255) ggggATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGgctg > 4:82905/1‑120 (MQ=255) ggggATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGgctg < 3:82905/120‑1 (MQ=255) ggATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGAccc > 1:89639/1‑149 (MQ=255) tGAACAAAACCTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATAGCTACAATAGGCGGGCGCCATGTCAATCACATCTGTCGGCTGCTGAACGCGCTGGGTAAACCTCATATCACCCTGCTCg > 4:264386/1‑149 (MQ=255) gaagaaATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTGat > 8:37657/1‑135 (MQ=255) aagaaATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGAc > 5:85467/1‑149 (MQ=255) agaaATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGAcc < 5:275836/149‑1 (MQ=255) tCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCAc > 4:76432/1‑59 (MQ=255) tCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCAc < 3:76432/59‑1 (MQ=255) tCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCaa < 4:106494/149‑1 (MQ=255) tCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCaa < 4:111075/149‑1 (MQ=255) ttCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCaa < 3:119649/146‑1 (MQ=255) ttCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCaa > 4:119649/1‑146 (MQ=255) ttCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGt > 1:139210/1‑149 (MQ=255) gCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTg > 2:268010/1‑149 (MQ=255) ggAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCg > 7:149298/1‑149 (MQ=255) tCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACCCCTCATATGACCCTGTTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGtgtg > 8:189026/1‑148 (MQ=255) tCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGCCCCTGCTCGACCTAGACGTCGGGCGCCATCAAGGTGGCTGGGGGCGtgtg > 4:10908/1‑148 (MQ=255) cccGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGGCAATCACTTCTGGCGGCTGCGGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGGGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGaa < 2:188066/149‑1 (MQ=255) ccGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAAc < 4:88572/149‑1 (MQ=255) aCGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGtt < 3:264386/149‑1 (MQ=255) cGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTc < 1:268010/149‑1 (MQ=255) gCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACt > 2:315628/1‑147 (MQ=255) gTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCt < 2:139210/149‑1 (MQ=255) catggcGCCCCCCTAGTGGAGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTc > 5:36847/6‑136 (MQ=255) catggcGCCCCCCTAGTGGAGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTc < 6:36847/131‑1 (MQ=255) gATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATg > 7:99220/1‑149 (MQ=255) gCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTAtt < 6:85467/149‑1 (MQ=255) gCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTAtt > 3:155777/1‑149 (MQ=255) cTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACATCATATGACCCTGCTCGACCTAGACGTGGGGCGACATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTATTc > 4:282598/1‑149 (MQ=255) tCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTATTc > 6:153661/1‑148 (MQ=255) cACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTATTCGAc > 5:232156/1‑149 (MQ=255) | GTTCGAGAAGCCGTCCAGGCATTTCCCGAGCTCTACTTCGCACGCTTGGTGGTACTTGGTGAGGGGGATAGTGAAGAAATCGTGCTACCTCGAATCCTTCAAGCTAAGGGAGCTCCCGTTGACGAATACGCAGTGGCGATCGCTCCACTAGGGGGGCGCCATGTCAATCACTTCTGGCGGCTGCTGAACGCGCTGGGTACACCTCATATGACCCTGCTCGACCTAGACGTGGGGCGCCATCAAGGTGGCTGGGGGCGTGTGAACTATGTTCGTACTCAGCTTGATGTATTCGAC > NC_002947/4183474‑4183767 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |