| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 95.7% | 69.3 / ‑2.9 | 23 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (13/9); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGC > NC_002947/278599‑278864 | cGCTACAGCTGCTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATCTACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑aaac < 4:96333/148‑3 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCt > 7:19257/1‑147 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCt > 6:153951/1‑147 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTa < 5:66852/148‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGGCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCGCTTCGCGGG‑TAAACCCGCTCCTa < 6:129843/148‑1 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AACCCGCTCCTccac > 5:16364/1‑148 (MQ=255) cgcgACAGACGTGTGCTGGTCCGGTGGTCCTGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTacac < 4:108836/147‑1 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACAt < 5:88867/148‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtg < 8:19257/148‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtg > 7:9631/1‑148 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 1:96/146‑1 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 6:6248/146‑1 (MQ=255) tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGTGATTTGTTTCAGAGGTGGCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACTCAGATGCGTCAAGATCTGTGCACTGt < 8:94069/148‑1 (MQ=255) tataCACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGATGTTCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAGCGGGtt < 2:3265/147‑1 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGCTCTGTGCACTGTAGGAGCGGGTTTAcc > 3:133606/1‑148 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAggg > 2:44368/1‑148 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACCTGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg > 6:69271/1‑147 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGATCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTTTAGGAGCGGGTTTACACGCGAAAGGGCCGGAACAg > 7:66787/1‑148 (MQ=255) ttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACCCATGCCTCAAGATCTGTGCACTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGCACAGGt > 5:36049/1‑147 (MQ=39) tttttGGAATATTTATAGAAGGGGGATTTGTTACAGATGTGCCGGGCTCTTCGCGGG‑TAAACCCCCGACTACAAACATGCCGGAAGATATGTGCACTGTAGGCTCGGGTTTACCCGCGAAATGGGCGGAAAAGGGTTACTCGGAGGcc > 6:12605/1‑148 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCAACACACATGCCGCAAGCGCGGTGCACTGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGCACAGGGTTACGCGGAGGCCGCCGTCCCCAGGCACGTgc > 4:16923/1‑147 (MQ=25) ggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGACAGGTTTACTCGGAGGCCGCAGGCCCGCGGAACTTgcg > 3:97333/1‑145 (MQ=39) gTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCGACACCCCTGCCGCAAGATCTGGGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGAAACGGGTTACTCGGAGGCCGCCGTCCCGCGGCACGTGCGCCAGAACTg > 4:156667/1‑148 (MQ=255) agagGTGCCGGGCTCTTCGCGGG‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCCCTGTAGGAGCGGGTTTACCCGCGCAAGGGCCGGAACAGGGTTACTCGGAGGCCGCAGTCCCGAGGCCCTTGCGCAAGAACTGCcgc > 7:38547/1‑147 (MQ=255) | CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGC > NC_002947/278599‑278864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |