| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,845,703 | 1 | . | G | 93.8% | 41.7 / ‑3.2 | 16 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (9/6); total (10/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑G‑GCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAA > NC_002947/3845562‑3845840 | tgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑g‑ggct < 1:148697/147‑4 (MQ=255) tGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCg > 1:3829/1‑148 (MQ=255) tCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTc < 3:115974/147‑1 (MQ=255) tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGATCa > 3:40263/1‑148 (MQ=255) aaGCCATCGCGCAGGCCGAGTTCATTGATTGTTATTGTTGACTTCGGCGGCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCTTCAGCCACGATGGATCa < 6:47703/145‑1 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGATCa < 4:148284/145‑1 (MQ=255) cgcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGAGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTg > 6:160088/1‑148 (MQ=255) aGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCa > 3:17279/1‑148 (MQ=255) ggCCTACTTCTTTTTTTGTTTTTGTGGGCCTCGCGGTCGCTCTGTCTCACGCGTTGCGCCATACTAAGAGCGGGAGCAGGGGCACAAAAGCCGTGTTTCGCGG‑GCTTATCCATCGTCAGCCACTATGTATCAGCCCGCGCCCTGCCAg < 8:84290/148‑1 (MQ=255) ttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTAAGCCACGATGGATCAGCCCGCGCCCGGCCAGGCCGGTTCACgcatca > 1:15728/1‑146 (MQ=255) gtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAggtggt > 8:29692/1‑147 (MQ=255) tctgtctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTAAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGAGGTCAAGCAGGCgccgag > 7:86466/1‑148 (MQ=255) tgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGG‑GCTGATCCATCGTCAGCCACGATGGCTCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGACCCGACa > 5:48547/1‑148 (MQ=255) gCGTGGCGCCAGACTAAGCGCTGGAGGACGGGCACAAACGCCGTGTTGCGCGG‑GCTGAGCCATCGCCCCCCCCGATGGAGCCGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCga < 1:9002/148‑1 (MQ=255) tAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GCCCTGATCCATAGTCAGCCCCCATGGATCAGCCCGCGCCCAGCCAGGCCCGTGCACCCAGCAACACGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGt > 8:118973/1‑148 (MQ=255) aaaaGACGTGTTTCGCGG‑GCTGATACATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAAt > 6:1661/1‑147 (MQ=255) cGTTTTTCGCGG‑GCTGATCCAGGGTCTGCCACGTTGGATCATCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTTGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCATATGACGAATTCACCaa < 8:137615/148‑1 (MQ=255) | TGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑G‑GCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAA > NC_002947/3845562‑3845840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |