New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3820884	24 (0.830)	5 (0.180)	5/282	3.1	18.4%	intergenic (+9/+34)	endA/ptxD	endonuclease I/phosphonate dehydrogenase
	?	NC_002947	= 3820924	21 (0.750)					coding (957/963 nt)	ptxD	phosphonate dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCCCGGGCTACAACCAGGTTACAGCGAAGAACCAGGTTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCGTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3820773‑3820884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaCGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCTTTGAAACGGTCAGCGGCAGTTGCCTGCCTTG  <  NC_002947/3820924‑3820854                                                                                                                                                                                         CTGCCCGGGCTACAACCAGGTTACAGCGAAGAACCAGGTTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCGTTTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCA                                     <  8:140435/148‑1  TGCCCGGGCGACAACCAGCTTACAGCGAAGAACCAGGGTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCGTTTCAAAGGCTG‑CGCGCCCCCGCTCCCACAGCGGCCGCGCAGC                                   <  7:64023/148‑1              AACCAGGTTACAGCGAAGAACCAGGTTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCGTTTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCTTTGAAACG                         <  6:15871/147‑1                       ACAGCGAAGAACCAGGTTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCCTTTAAACGGCTGACGCCCCCCCCCTCCCACAGGGGCCGCCCAGCCTTTGAAACGGTCAGCGGCA               >  6:93204/1‑148                                    AGGTTACCTTCCCAAACGAAGGTGAAGCGCAGGCAGCGGGGTAGCGCACGGCAGGCACCTGCCGCTGACCGTTTCAACGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCTTTGAAACGGTAAGCGGCAGTTGCCTGCCTTG  <  5:93204/148‑1                                                                                                                                                                                         CTGCCCGGGCTACAACCAGGTTACAGCGAAGAACCAGGTTACCTTCGCAAACGAAGGTGAAGCGCAGGCAGCGGGGTATCGCAAGGCAGGCAACTGCCGCTGACCGTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3820773‑3820884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaCGGCTGACGCGCCCCCGCTCCCACAGGGGCCGCGCAGCCTTTGAAACGGTCAGCGGCAGTTGCCTGCCTTG  <  NC_002947/3820924‑3820854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.