New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759435	12 (0.410)	3 (0.130)	3/226	3.3	21.9%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759463	12 (0.530)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
Rejected: Coverage evenness skew score above cutoff.

CTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGG  >  NC_002947/5759326‑5759608                                                                                                                                          |                                                                                                                                                  cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGGTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                                         <  7:28512/148‑1 (MQ=255) cTGTCCAATACGGTGGCGGGGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                                         <  7:116928/148‑1 (MQ=255)    tCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATACCCAGTAGGAGCGGGt                                                                                                                                       >  4:107657/1‑147 (MQ=255)     ccAATACGGTGGCGGTGACGGTGGATGCGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGttt                                                                                                                                     <  7:84161/148‑1 (MQ=255)        aTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAACCGCGGCGAACCCCGCCGCGGGAACGGCGCAAACCCCGGTAGGCTCGGGtgttcc                                                                                                                                  >  8:62610/1‑143 (MQ=255)                                            aGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCCCTGCTACGCCGGCCGACGGAACGGCGGCAACCCCGGTAGGAGCGGGGTTACCCGCGCAGCGGCCCGCGCCGGCAACAAAAAAGCGccc                                                                                              >  3:42399/1‑148 (MQ=37)                                             gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTTAAACCGCTCCGACGCCGGGCGAGGGCACGGGGCAATCCCCGGTAGGCGCGGGGTTTCCCGCGCAGCGGCCCGCGCCGGCCACAAAAAACCGcccc                                                                                             >  7:87503/1‑148 (MQ=255)                                                                tGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCGCCGACGCAGGCCGAGGGCACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGCAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGCGCGGCGCGTTCTTGaaa                                                                          >  8:112789/1‑148 (MQ=38)                                                                                                tAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCa                                          >  3:83051/1‑148 (MQ=255)                                                                                                   aCCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAccc                                       >  2:117019/1‑148 (MQ=255)                                                                                                               gCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTg                                                          >  3:66926/1‑117 (MQ=255)                                                                                                                cAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGc                                                         <  4:66926/117‑1 (MQ=255)                                                                                                                   gCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCCCCCGCTTCCTGCATACGCt                       >  5:50114/1‑148 (MQ=255)                                                                                                                    ccGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCt                       >  8:113263/1‑147 (MQ=255)                                                                                                                      gAGGGAACGGCGCAATACACTCTACGAGCGGGTTTACCCGCGAAGAGGCCCGCGCAGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAACCGCTTACTGCATACGCTGCa                    >  8:91047/1‑148 (MQ=39)                                                                                                                                   aaTCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGt        >  1:25433/1‑147 (MQ=255)                                                                                                                                        ccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGCCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAggg  >  1:105037/1‑148 (MQ=255)                                                                                                                                          |                                                                                                                                                  CTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGG  >  NC_002947/5759326‑5759608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.