New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5874548 =	36 (1.240)	5 (0.190)	5/268	2.9	14.4%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5874630 =	26 (0.970)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
Rejected: Frequency below/above cutoff threshold.

GTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCA  >  NC_002947/5874483‑5874777                                                                                                                                                    |                                                                                                                                                    gTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGaaa                                                                                                                                                     <  5:159956/148‑1 (MQ=255)   cTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAgg                                                                                                                                                   <  4:149391/148‑1 (MQ=255)   cTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGAGAAAgg                                                                                                                                                   <  2:116265/148‑1 (MQ=255)   cTTGAGCGTGGGCAGGTGTTCCCTCTCTCGGTCTTCCTTAAACTGGCATTTTGCGGTCGCTTCTTCGCGTGCTTACCCGCTCCTGCCAAGGTATCTCCGGCCTTGAGGCGTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAgg                                                                                                                                                   <  8:28271/148‑1 (MQ=38)   cTTGAGCGGGGTCAGGTGTTCCATCTCTCGGGCGTCCTTAAACTGGCATTTTGCGGTAGCTTCATCGCGGGCTTACCCGCTCCAGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAgg                                                                                                                                                   <  8:28273/148‑1 (MQ=255)    ttGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAACCTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCTCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAggg                                                                                                                                                  <  1:166119/148‑1 (MQ=255)           tcgTCAGGTGTTCCATCTCTCGGGCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTAACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAg                                                                                                                                           <  2:9227/146‑1 (MQ=255)             gTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGcc                                                                                                                                         <  8:62344/148‑1 (MQ=255)              tCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAg                                                                                                                                                    >  1:118850/1‑136 (MQ=255)               cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAgg                                                                                                                                                   <  2:118850/136‑1 (MQ=255)                  gtgtTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGc                                                                                                                                    >  8:24112/1‑148 (MQ=255)                                                           tAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTc                                                                                           <  3:146891/148‑1 (MQ=255)                                                            aGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCg                                                                                          <  3:81706/148‑1 (MQ=255)                                                               ttcttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGtc                                                                                       <  1:90255/148‑1 (MQ=255)                                                               ttcttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTAGGtc                                                                                       >  8:86159/1‑148 (MQ=255)                                                                         gcttgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGt                                                                             >  6:58408‑M2/76‑148 (MQ=255)                                                                           ttgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcaaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTc                                                                                           >  6:24504‑M2/74‑132 (MQ=255)                                                                            tgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcaaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCg                                                                                          <  5:24504‑M2/60‑1 (MQ=255)                                                                              cccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACgg                                                                         >  5:121858‑M2/71‑147 (MQ=255)                                                                                   tcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAAc                                                                    >  3:139073‑M2/66‑147 (MQ=255)                                                                                      tGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGa                                                                 <  6:67210/147‑1 (MQ=255)                                                                                          aaGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTg                                                            >  4:77919/1‑148 (MQ=255)                                                                                           aGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGGAACCGATCTTgg                                                           >  7:142376/1‑148 (MQ=255)                                                                                              tATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTACCCGATCTTGGCCa                                                        <  8:83120/148‑1 (MQ=255)                                                                                                      gCCTTGAGGCCTGCGCAGTAACTGTGGGAGCGCGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTGTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGcc                                                >  3:102310/1‑148 (MQ=255)                                                                                                        cTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCgg                                              >  5:106590/1‑148 (MQ=255)                                                                                                                cTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTACCCGATCTTGGCCAGCGCTGCCGGCCCCAGGt                                      >  6:1982/1‑148 (MQ=255)                                                                                                                cTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGt                                      >  3:112926/1‑148 (MQ=255)                                                                                                                         aCCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGt                             >  1:33971/1‑148 (MQ=255)                                                                                                                                       gCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGACCAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCt                 >  7:29112/1‑146 (MQ=255)                                                                                                                                       gCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGc               >  1:115986/1‑148 (MQ=255)                                                                                                                                                    aGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGccacca  <  7:24112/148‑1 (MQ=255)                                                                                                                                                    aGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGccacca  >  1:110838/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCA  >  NC_002947/5874483‑5874777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.