| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,340,089 | 0 | G | C | 38.9% | 9.6 / 11.2 | 18 | intergenic (+74/‑257) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (6/5); new base C (5/2); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACC > NC_002947/4339947‑4340214 | gcgGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCCCGAATGCGGGGGTGCCACCCcccaccca > 4:28445/1‑148 (MQ=255) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGAGCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTcg‑c < 3:82958/148‑1 (MQ=25) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTcg‑c < 3:80806/148‑1 (MQ=25) gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcg‑c < 6:144145/148‑1 (MQ=255) gCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCCCGAAAGCCACGGTGACACCCCCCACCCAATCG‑CCGGTAAAc > 6:150884/1‑148 (MQ=255) cTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAAcc < 1:119009/148‑1 (MQ=255) tATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTTCCCCCGAAATCGAGGGGGCCCCCCCCCCCGCAATAG‑CCGGTAAAccc > 6:26930/1‑148 (MQ=255) tGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTAACCGCGCAAGCGCGGGTGACCCCCCCGCCCCAATAGCCGGGAAAAcccc > 6:72574/1‑147 (MQ=255) cccGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTTACCGCGCAACCGGGGGGGCCCCCCCCGCCGCCATAC‑CGGGTTAACCCGCTCCGACAGGGCCCGAGGTGCgttt > 3:23475/1‑148 (MQ=255) gaACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTTAACCCCCAATG‑GAGGGTGACACCCCCCACCCCATAG‑CCGGTAAAACCCCACCCAAACCGCCCATTGTGCGTTTTTAAAGGCGGAGTGATTGCCCGGCGccc > 8:71358/1‑148 (MQ=255) gCGGGGCCGTGTAGGCGCGGG‑TTTACCCGCTATGGGTCGGGGGACACCACCGACGAATTCG‑GGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCtt < 6:56466/147‑1 (MQ=37) gggggCCTTGTCGGGGGGGG‑TTCCCCCGGGAATGCGCGGGGGACCCCACGGACGCAGTCG‑GGGTTAACCCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 5:150884/146‑1 (MQ=255) cGGGCCCCTGTCGGAGGGGG‑TTACCCCGCGAAGGCGGGGGGCACCCCCCCGCCGCTTGCG‑GGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 7:71358/147‑1 (MQ=255) ccTGTAGGAGCGGG‑TTTAACCCCGAATGCGAGGGGGCCACCCCCGCCGCATTAG‑CGGGTAAACCCGCGCCGACAGGGCCCGTGGTGCTTTTTACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAAAATTGGAATaa > 2:106573/1‑146 (MQ=255) ggg‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGat > 2:68802/1‑147 (MQ=255) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑CGGGTAAACCCGCTCCTACAGGGCCCCTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCCTACCTCTTGCCAACATCTTGGAATACCATAATATGATATCCCGTAg > 4:94415/1‑148 (MQ=21) ccGCGAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAg > 2:169618/1‑148 (MQ=255) cgcgAATGCGTCGGTGGTGTCACCCTCGCATTCG‑CGGGTAACCCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCAGACCTCTTGCCTAAATCTTGGAATACCATAATATGATATCCCGTAGa > 1:170423/1‑148 (MQ=25) gcgAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAACCCGCTCCGACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCC‑TACCTCTTGCCAAACTCGTGGAATAACATAAAATGAAATCCCGAAGAcc > 5:114966/1‑148 (MQ=255) | GCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑CGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACC > NC_002947/4339947‑4340214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |