New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 559411947 (0.690)8 (0.150) 8/228 6.0 17.4% intergenic (‑66/+79) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 = 5594156 38 (0.700)intergenic (‑103/+42) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593944‑5594119
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaaGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  NC_002947/5594156‑5594009
                                                                                                                                                                                                                                                                                                                                    
ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGCATGGGGATTGGATGGTCGGGAGAGAACTGCCTGGGTGATGTCATGCTCATGTCCGCAGGAGTGATGATAAGTGGCATACACCA                                                                                                                                                                                 >  7:334883/1‑149
 TCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGAGAGCACAGAAAATGCGCTGCAGGATGGGGATTGGATGTTCGTGAGAGAACTGGCTGCGTGATGTCATGGTAATGTCCGCAGGAGTGATGTTAAGTGGCATACACCAC                                                                                                                                                                                >  5:378595/1‑149
      aCGATGCCTCGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGT                                                                                                                                                                           <  8:169296/148‑1
        GATGCCGAGGGAAAACCACACTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         <  8:188328/149‑1
            CCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGC                                                                                                                                                                     >  5:140562/1‑149
             CGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCAGCAGGAGTGATGTTAAGTGGCATACCCCACCCTGTGGGAGCG                                                                                                                                                                    >  4:326990/1‑149
                GGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGC                                                                                                                                                                 <  2:70087/149‑1
                  GAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT                                                                                                                                                               >  1:219694/1‑149
                             TGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAG                                                                                                                                                     >  5:72376/1‑148
                                                                   TGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGATAAGGGGCATAGACCAGCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTC                                                                                                              <  2:216022/149‑1
                                                                            GATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAG                                                                                                     >  6:100276/1‑149
                                                                            GATGGCCGGCAGAGAACTGGCTGGGGGATGCCATGGTCATGTCCGCAGCAGTCATGTTACGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCTAAGCAAGCACTGCGGTGCATGTCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                      <  1:226811/148‑1
                                                                                     GAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCC                                                                                            <  6:72376/149‑1
                                                                                               GCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGT                                                                                  <  5:100276/149‑1
                                                                                                         GTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCG                                                                                                 >  1:43494/1‑124
                                                                                                         GTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCG                                                                                                 <  2:43494/124‑1
                                                                                                                                                    ACCCTGTGGTAGCGGGCTTGCCGGCTAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTTTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCC                               <  7:1146/147‑1
                                                                                                                                                    ACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCA                              <  5:132081/148‑1
                                                                                                                                                     CCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGT                            >  6:384282/1‑149
                                                                                                                                                         GTGGGAGCGGGCTTGCCCGCGAAGCAAGCAGTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCT                         <  2:268721/148‑1
                                                                                                                                                            GGAGCGGGCTTCCCCGCTAAGCAAGCACTGCGGTGCATGGCACGGGCTTTGCCGGTTTGGGCGGCCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCC                     <  5:23884/149‑1
                                                                                                                                                                   GCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCAT              >  5:124633/1‑149
                                                                                                                                                                    gTTGCCCGGTAAGCATGCACTGCGGTGCTTGGCACGGGATTTGCGGGTGTTGGCGGGTATGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATC             <  1:352674/148‑1
                                                                                                                                                                         CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATC        >  6:140562/1‑149
                                                                                                                                                                               AGCAAGCAGTGCGGTGCATGGCACCGGCTTTGCCTGTGTTGGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCAT   <  1:231057/148‑1
                                                                                                                                                                               AGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  6:124633/149‑1
                                                                                                                                                                               AGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  6:355088/149‑1
                                                                                                                                                                                                                                                                                                                                    
ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593944‑5594119
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaaGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  NC_002947/5594156‑5594009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.