| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098849 = | 64 (0.940) | 8 (0.130) | 7/266 | 7.4 | 12.5% | coding (240/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | 6098886 = | 52 (0.820) | coding (203/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099005‑6098849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcttcAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTT > NC_002947/6098886‑6099031 CCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGG < 7:95665/149‑1 CTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGAC > 4:39657/1‑149 TGAAGCTGTCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACG > 3:68594/1‑149 TGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGT < 1:379425/117‑1 TGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGT > 2:379425/1‑117 GAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGC > 3:54765/1‑120 GAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGC < 4:54765/120‑1 AAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGC > 5:40020/1‑149 CTGGCTGCCGGGGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAG < 4:68594/149‑1 GCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGC > 8:69199/1‑149 CAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTAACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCA > 6:111185/1‑149 CAGCTTCAGCGTCCGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCGCACTGATACCCACGCTGTGCGCCAAAACGGCCAAGGAGCTGTGCATGACGGCAGCCGGGTCCCGCAGCACGGGGTCGGCCA > 2:56/1‑149 CAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTT < 7:69199/147‑1 CCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099005‑6098849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcttcAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTT > NC_002947/6098886‑6099031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |