New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594092 =	41 (0.600)	10 (0.180)	9/228	5.6	22.0%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	38 (0.700)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
Rejected: Coverage evenness skew score above cutoff.

ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGC  >  NC_002947/5593944‑5594232                                                                                                                                                     |                                                                                                                                             aTCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGCATGGGGATTGGATGGTCGGGAGAGAACTGCCTGGGTGATGTCATGCTCATGTCCGCAGGAGTGATGATAAGTGGCATAcacca                                                                                                                                              >  7:334883/1‑149 (MQ=255)  tCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGAGAGCACAGAAAATGCGCTGCAGGATGGGGATTGGATGTTCGTGAGAGAACTGGCTGCGTGATGTCATGGTAATGTCCGCAGGAGTGATGTTAAGTGGCATAcaccac                                                                                                                                             >  5:378595/1‑149 (MQ=255)       acGATGCCTCGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCtgt                                                                                                                                        <  8:169296/148‑1 (MQ=255)         gATGCCGAGGGAAAACCACACTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTgg                                                                                                                                      <  8:188328/149‑1 (MQ=255)             ccGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGc                                                                                                                                  >  5:140562/1‑149 (MQ=255)              cGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCAGCAGGAGTGATGTTAAGTGGCATACCCCACCCTGTGGGAGCg                                                                                                                                 >  4:326990/1‑149 (MQ=255)                 gggAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGc                                                                                                                              <  2:70087/149‑1 (MQ=255)                   gAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCtt                                                                                                                            >  1:219694/1‑149 (MQ=255)                              tGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGaag                                                                                                                  >  5:72376/1‑147 (MQ=255)                                aaaaCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACAcc                                                                                                               >  1:290760/1‑149 (MQ=255)                                  aaCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCgg                                                                                                             <  6:76725/149‑1 (MQ=255)                                       gTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGGGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGCCAAAg                                                                                                        <  4:355147/149‑1 (MQ=255)                                           cgAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCgg                                                                                                    >  5:384282/1‑149 (MQ=255)                                                 ccGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTTCCCGCGAACACCGGCAAAGCCGGTGCCAt                                                                                              >  4:93822/1‑149 (MQ=255)                                                      aaTGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCAcc                                                                                         <  8:15704/149‑1 (MQ=255)                                                          cgcTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCa                                                                                      <  6:185507/148‑1 (MQ=255)                                                                  gATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgct                                                                             >  6:355088/1‑149 (MQ=255)                                                                  gATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgct                                                                             >  6:124633/1‑149 (MQ=255)                                                                  gATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgc                                                                              <  6:10716/148‑1 (MQ=255)                                                                   aTGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCCAACACAGGCAAAGCCGGTGCCATGCACCGCACtgcttgct                                                                             >  1:231057/1‑148 (MQ=255)                                                                        gATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                       <  6:140562/149‑1 (MQ=255)                                                                             gATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCATACCCGCCAACACCCGCAAATCCCGTGCCAAGCACCGCAGTGCATGCTTACCGGGCaac                                                                  >  1:352674/1‑148 (MQ=255)                                                                              aTGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGc                                                                 <  5:124633/149‑1 (MQ=255)                                                                                     ggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGGCCGCCCAAACCGGCAAAGCCCGTGCCATGCACCGCAGTGCTTGCTTAGCGGGGAAGCCCGCTcc                                                          >  5:23884/1‑149 (MQ=38)                                                                                         agaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCACTGCTTGCTTCGCGGGCAAGCCCGCTCCcac                                                       >  2:268721/1‑148 (MQ=255)                                                                                            aCTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAggg                                                   <  6:384282/149‑1 (MQ=255)                                                                                              tggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGt                                                  >  5:132081/1‑148 (MQ=255)                                                                                               ggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAAACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTAGCCGGCAAGCCCGCTACCACAGGGt                                                  >  7:1146/1‑147 (MQ=255)                                                                                                gctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGc                                                                                                            <  4:113255/88‑1 (MQ=255)                                                                                                           tcatgttcttgTCCGCAGGAGTGATGTTAAGTGGCATCCTCCACCCTGTGGGAGGGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCCCCGCAGTGCTTGCTTCGCGGGCATGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                     <  6:401259/148‑1 (MQ=25)                                                                                                           tcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACACGGTAACGTGCTGCGGt                                     >  5:401259/1‑148 (MQ=255)                                                                                                           tcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCCCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAACCCCGCTCCCCCAGGGTAAGGTGCTGAGGtt                                    >  7:304102/1‑149 (MQ=255)                                                                                                            catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                    >  7:22315/1‑148 (MQ=255)                                                                                                                   atgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACttt                            >  2:252254/1‑149 (MQ=255)                                                                                                                       ccGCAGGAGTTATTTTAAGGGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                         <  8:22315/148‑1 (MQ=255)                                                                                                                                 gATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCGGCTAACACCGGCAAAGCGGGTGCAATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctgg               <  1:268721/148‑1 (MQ=255)                                                                                                                                   tGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGGGCTGCGGTTTAGACTTTGTGGTACAgctggctg            >  2:239275/1‑149 (MQ=255)                                                                                                                                     ttAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc          >  1:280693/1‑149 (MQ=255)                                                                                                                                             cttACACCACCGTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGTTACAGCTGGCTGCCTTCCTGGc  <  2:290760/147‑1 (MQ=255)                                                                                                                                             cATACTCCACCCTGGTGTAGCGGGCTTGCCCGGTAACACGGCGAACGGCGGTGCATTCCAGGGAAGTCCTTCCTTCGGGGCCATGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTGCTGGc  <  8:334883/149‑1 (MQ=255)                                                                                                                                             cATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc  <  1:252254/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGC  >  NC_002947/5593944‑5594232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.