New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1487006 =63 (0.930)8 (0.150) 7/224 6.4 14.9% intergenic (+22/+108) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
?NC_002947 1487096 = 42 (0.780)intergenic (+112/+18) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486948‑1487244
                                                                                                                                                    |                                                                                                                                                    
ccGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCCCTCCCACACGTTTAGCGCTGGCTTTGGAGCCTGGGTTATTACTGTGGGAGCGGGCGTGGCCGCGAAGGGcc                                                                                                                                                      >  7:170052/1‑149 (MQ=255)
    aCCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGGGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCaa                                                                                                                                                  >  2:75983/1‑149 (MQ=255)
           tgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTACCACAGGGTTATCGCTGGCGTTGGAGCCTGCGGAATTACAGTGGGAGCGGGGGTGGCCGCGAAGGGCCGCAACGCGGcc                                                                                                                                           >  8:30971/1‑149 (MQ=255)
            gttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGACCGCGAAGGGCCGCAACGCGGcc                                                                                                                                           <  1:32096/148‑1 (MQ=255)
              tCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACCCCCCCTCCCCCAGGTTTTGCGCTGGGGTTGGAGGCGGGGGAATTCCTGTGGGGGCGGGCGGGGCCGCGCAGGGCCGCCACGCGGcccag                                                                                                                                        >  1:340392/1‑147 (MQ=255)
               ccTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTgg                                                                                                                                       <  1:75983/149‑1 (MQ=255)
                 tCAGCCCGATCCTGCATTGATGCTGTTTGGGCGGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTgg                                                                                                                                       <  1:245582/147‑1 (MQ=255)
                 tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGAAGGCTTTGGGGCATGGGTAATTCCTGTGGGAGCGGGCGGGCCCGCGAAGGGACGCAACGCGGccaggg                                                                                                                                       >  2:245582/1‑143 (MQ=38)
                 tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCCCTCCCACAGGTTTAGCGCAGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGt                                                                                                                                     >  7:111135/1‑149 (MQ=255)
                   aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTa                                                                                                                                  >  6:189870/1‑149 (MQ=255)
                   aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACCCCCGCAACCACACGTTTAGCGCGGGCGTTGGAGCCAGCGTAAATACGGAGGGAGCGGGCGTGCCCGCGAAAGGCCGCAACCCGGCCCGGGGtt                                                                                                                                    >  4:147897/1‑148 (MQ=255)
                          tCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTtctc                                                                                                                            <  3:147897/149‑1 (MQ=255)
                          tCCTGCATTGATGCTGGTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCGGGCTTTGTCGCCTGCGTAATTCCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTtctc                                                                                                                            <  1:218124/149‑1 (MQ=38)
                                                   cgcgGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCgg                                                                                                    <  2:285147/148‑1 (MQ=255)
                                                    gcgGCAGCCCTTCGCGGGCACGCCCGCGCCCACAGGTTTAGCGCTGGGTTTGGAGCCGGCGTAATTGCGGTGGGGGCGGGGGTGGCCGCGAAGGGCCGCAACGCGGGCCGGGGGTTATTTGTCTTGCTGGCTGGCAGCCGGCGCCGGTg                                                                                                  >  2:266232/1‑149 (MQ=255)
                                                       tctgCCCTTCGGGGTCACGCCCGATCCAACTGGTTTAGCGCTTGGTTTGGAGCCTGCGTAATTCCTGTGGGTGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggcg                                                                                               <  8:170052/146‑1 (MQ=255)
                                                              ttCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAg                                                                                        >  8:290106/1‑149 (MQ=255)
                                                                cgcgGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGc                                                                                       <  5:144902/148‑1 (MQ=255)
                                                                 gcgGGCCCGCCCGCTCCCACCGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGcc                                                                                      <  7:291957/148‑1 (MQ=255)
                                                                       aCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTc                                                                               >  4:58819/1‑149 (MQ=255)
                                                                       aCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTc                                                                               >  2:215370/1‑149 (MQ=255)
                                                                        cGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCg                                                                              <  1:266232/149‑1 (MQ=255)
                                                                           ccGCCCCCACCGGTTCCGCGCGGGCTTTCCCGCCGGCTTAATTCCTGTGGGCGCGGGCGGCCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCg                                                                           <  1:394774/149‑1 (MQ=255)
                                                                            cGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCg                                                                           >  4:73865/1‑148 (MQ=255)
                                                                                  cacaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    >  2:310671/1‑149 (MQ=255)
                                                                                       gTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAc                                                               >  6:313236/1‑149 (MQ=255)
                                                                                         ttAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActg                                                             >  7:357756/1‑149 (MQ=255)
                                                                                             ggcTGGCTTTGGAGGCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACtgctgc                                                         <  8:111135/148‑1 (MQ=255)
                                                                                               cTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCa                                                                 <  1:183615/139‑1 (MQ=255)
                                                                                               cTGGCTTTGGAGCCTGCGTAATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCa                                                                 >  2:183615/1‑139 (MQ=255)
                                                                                                  gCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGtt                                                    >  5:207492/1‑149 (MQ=255)
                                                                                                    tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgc                                                  >  3:117964/1‑149 (MQ=255)
                                                                                                    tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCCGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgc                                                  >  7:69882/1‑149 (MQ=255)
                                                                                                     ttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGccc                                                                                     >  1:13166/1‑113 (MQ=255)
                                                                                                     ttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGccc                                                                                     <  2:13166/113‑1 (MQ=255)
                                                                                                     tgggAGCCTGCGTAATTCCTGCGGGAGCGGGCGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg                                                 <  3:381121/147‑1 (MQ=255)
                                                                                                         aGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATc                                             <  5:313236/149‑1 (MQ=255)
                                                                                                         aGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATc                                             <  7:30971/149‑1 (MQ=255)
                                                                                                             tGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCt                                         >  2:389524/1‑149 (MQ=255)
                                                                                                                gTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCCGCCCCACCTCGGCGATCAGCTTGAACTGCTGCCCGGTg                                                   >  8:322781/1‑136 (MQ=255)
                                                                                                                gTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTg                                                   <  7:322781/136‑1 (MQ=255)
                                                                                                                   aTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATgg                                   <  1:389524/149‑1 (MQ=255)
                                                                                                                      ccTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCCCGATGGtt                                 <  4:89276/148‑1 (MQ=255)
                                                                                                                          tgGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCATGTGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGATGCCCTTTGCGCATCACCTCGAAGGTTAtctt                            >  3:95759/1‑149 (MQ=255)
                                                                                                                            ggAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTAtcttc                           <  6:201897/148‑1 (MQ=255)
                                                                                                                             gAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCCGCCGGCGCCGGTGGCGGCCGCAGCCCGGCCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTGATCTtctc                         >  2:253358/1‑149 (MQ=255)
                                                                                                                                  ggCGTGCCCGCGAAGGGCTGCCGCGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAg                                                                                        <  6:203480/81‑1 (MQ=38)
                                                                                                                                  ggCGTGCCCGCGAAGGGCTGCCGCGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAg                                                                                        >  5:203480/1‑81 (MQ=38)
                                                                                                                                     gTGCCCGCGAAGGGCCGCAACGCGGCCCGGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCTGCTTCAACTGCTGCCCGTTGCTGATCCCCTCGATGGTTATCTTATCGTTGGGCt                 >  8:371515/1‑149 (MQ=255)
                                                                                                                                        cccGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGa              >  6:37261/1‑149 (MQ=255)
                                                                                                                                               aGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCgcgc       <  4:117964/149‑1 (MQ=255)
                                                                                                                                                  gCCGCAACGCGGCCCTGGGTTTATTTCTCTTCGTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATg                                    <  2:142753/117‑1 (MQ=255)
                                                                                                                                                   ccGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCtt                <  7:369897/136‑1 (MQ=255)
                                                                                                                                                   ccGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCtt                >  8:369897/1‑136 (MQ=255)
                                                                                                                                                   ccGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTAcc   <  1:215370/149‑1 (MQ=255)
                                                                                                                                                    cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGGTATCTTCTCGTTGGGCTTGATCCGCGCTACCt  >  7:347527/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486948‑1487244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.