| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 43.3% | 64.3 / 118.0 | 104 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (29/30); new base T (21/24); total (50/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 110 total aligned reads displayed.
AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195495‑195775 | aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGAcc < 8:84904/149‑1 (MQ=39) cccGGCTAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGATAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGa < 7:127180/149‑1 (MQ=255) ccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGAc < 1:354557/149‑1 (MQ=39) cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGa < 3:203841/149‑1 (MQ=38) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGc < 8:359361/146‑1 (MQ=17) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGc > 7:359361/1‑146 (MQ=17) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATCTTTGCGACTCGGTCGACACCACCACCGCGACCCAGACGGcca > 1:134471/1‑147 (MQ=11) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc > 4:190253/1‑149 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGATCCCGTc > 1:29317/1‑149 (MQ=12) acaacaacaGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 2:162668/1‑148 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:138074/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg > 5:254913/1‑144 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:351890/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 5:188045/1‑149 (MQ=17) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAATGACACCGAATCCGACCCCG‑GCTCAGCCCACGATC‑‑AACGACTCGGTCCACACCACCACAGCGACCCTGACCGCGAGCCCGTCGGACACCGaa > 7:137468/1‑149 (MQ=11) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 2:128169/1‑149 (MQ=17) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 8:116593/148‑1 (MQ=17) agtgTCAGGGTCACAATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGATTCCGACCCCG‑GCTCAGACCAGTATC‑‑AACGAGTCGGTCGACACCACCACCGCGACCCTGACGGCGATGCTGTCGGTCACCGAAGGCGGCGt < 4:278775/146‑1 (MQ=11) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 4:43942/1‑149 (MQ=37) aGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 4:302965/1‑143 (MQ=37) aGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 3:302965/143‑1 (MQ=37) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑ACCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 5:276132/1‑149 (MQ=12) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGACACCGAAGGCGGCGTGATCACt > 3:301351/1‑149 (MQ=12) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 3:175884/149‑1 (MQ=17) tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:137596/1‑127 (MQ=38) tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTac > 7:17542/1‑149 (MQ=39) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca < 1:351890/148‑1 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCg > 2:63502/1‑149 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGGCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTc > 6:380641/1‑121 (MQ=38) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGAACTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑cc > 1:110029/1‑149 (MQ=11) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCg > 2:295450/1‑149 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCg > 6:77587/1‑149 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGt < 1:128169/149‑1 (MQ=17) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGa < 1:63502/148‑1 (MQ=39) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGAcc < 3:43942/149‑1 (MQ=39) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGAcc > 2:62101/1‑149 (MQ=17) gaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGAccc < 1:162668/149‑1 (MQ=39) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCt > 1:231385/1‑149 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGa < 2:110029/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGa < 7:202521/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGa < 7:35530/149‑1 (MQ=17) acaggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCaa < 7:9338/146‑1 (MQ=17) aCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCaa > 3:144778/1‑149 (MQ=39) ccGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAAc > 2:187646/1‑149 (MQ=39) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAAcc < 3:252907/148‑1 (MQ=11) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCt > 4:85280/1‑149 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGa > 1:311516/1‑135 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGa < 2:311516/135‑1 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGCCCCTGAGCAACCCt > 4:131521/1‑149 (MQ=21) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGAcc < 7:233053/81‑1 (MQ=38) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGAcc > 8:233053/1‑81 (MQ=38) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGc > 8:78899/1‑149 (MQ=39) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 1:195950/92‑1 (MQ=37) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc > 2:195950/1‑92 (MQ=37) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGcc < 1:187646/149‑1 (MQ=39) aTTTCGAGCAACTGCCCCGGTCTCCGACCCCG‑GCTCAGACCACGAGC‑‑ATCGACTCCGTCGACACCACTACCGCGACCCTGTCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCa < 4:106441/148‑1 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGcc > 2:155747/1‑149 (MQ=17) aGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 1:62101/149‑1 (MQ=21) aGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:78899/149‑1 (MQ=39) gCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCgg < 4:378948/149‑1 (MQ=17) cAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCCGTGACCCTGAGCAACCCTGCCCAGACGCCgg < 1:250894/149‑1 (MQ=255) aCTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGtga > 1:93834/1‑147 (MQ=2) tGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTg < 6:96815/132‑1 (MQ=17) tGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTg > 5:96815/1‑132 (MQ=17) aCCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGAc < 2:80159/137‑1 (MQ=17) aCCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGAc > 1:80159/1‑137 (MQ=17) aCCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 6:312486/1‑149 (MQ=255) ccccGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg < 6:188045/149‑1 (MQ=255) cccGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa < 2:93834/149‑1 (MQ=12) cccGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 4:153326/1‑148 (MQ=255) cccGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 6:146921/1‑95 (MQ=37) cccGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 5:146921/95‑1 (MQ=37) cgcaTCCGCCCGCG‑GCTCGGACCACGATC‑‑AACGACGCGCTCGACACCACTACGGCGACCCGGACGGCGAGCCCGTCGGTCACCGAAGGCGGCTTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 8:273424/146‑1 (MQ=11) cGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGATCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 2:29317/149‑1 (MQ=255) cGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 1:377227/149‑1 (MQ=255) aaTCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 8:23371/1‑147 (MQ=255) aaTCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 7:23371/147‑1 (MQ=255) tCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 6:276132/149‑1 (MQ=255) cccG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg > 1:170481/1‑149 (MQ=38) cccG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 2:231385/149‑1 (MQ=38) cccG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 4:13778/139‑1 (MQ=40) cccG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 3:13778/1‑139 (MQ=40) cG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc < 8:17542/149‑1 (MQ=39) cTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCa > 3:213545/1‑148 (MQ=39) aGACCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 5:312486/147‑1 (MQ=37) aGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 4:213545/147‑1 (MQ=39) aCCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 8:291285/1‑149 (MQ=255) aCCACGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 5:77587/149‑1 (MQ=255) cGATC‑‑AACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTCAACCTGTCCAACGGCCAAACGATTAcc < 4:301351/149‑1 (MQ=255) aCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 3:382073/1‑147 (MQ=39) cGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAg > 7:257151/1‑87 (MQ=33) cGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAg < 8:257151/87‑1 (MQ=33) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 2:163716/1‑149 (MQ=255) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGCTTACCGTTGAAGCggg > 8:316239/1‑149 (MQ=255) atgccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGTCCAGACGCCGGTGACCGTGACCCTGTCCAAc > 5:306914/4‑116 (MQ=1) atgccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGTCCAGACGCCGGTGACCGTGACCCTGTCCAAc < 6:306914/113‑1 (MQ=1) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 8:130167/114‑1 (MQ=255) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 2:98324/1‑147 (MQ=39) cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 6:287558/1‑103 (MQ=255) cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 5:287558/103‑1 (MQ=255) | AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCG‑GCTCAGACCACGATC‑‑AACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACA‑CCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195495‑195775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |