Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	196,351	0	C	G	30.4%	132.3 / 68.8	92	T619T (ACC→ACG)	PP_0168	putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (35/29);  new base G (14/14);  total (49/43)
Fisher's exact test for biased strand distribution p-value = 8.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC  >  NC_002947/196203‑196490                                                                                                                                                       |                                                                                                                                            aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc                                                                                                                                             <  8:48174/149‑1 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc                                                                                                                                             <  2:259113/149‑1 (MQ=39)     cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa                                                                                                                                         >  2:376023/1‑149 (MQ=39)        gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCg                                                                                                                                      >  8:87347/1‑149 (MQ=39)         aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt                                                                                                                                     <  2:383040/149‑1 (MQ=39)          tccaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                    <  7:344303/146‑1 (MQ=255)          tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                    <  1:191725/149‑1 (MQ=39)          tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                    >  2:38874/1‑149 (MQ=39)          tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                    <  1:38874/149‑1 (MQ=39)            aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                                   >  5:380088/1‑148 (MQ=39)             aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                                   >  6:44052/1‑147 (MQ=39)                  tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                            >  6:5207/1‑149 (MQ=39)                    ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc                                                                                                                           >  2:116898/1‑148 (MQ=39)                      tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa                                                                                                                         >  4:92640/1‑148 (MQ=39)                          caccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc                                                                                                                     >  1:280484/1‑148 (MQ=18)                           accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                                   <  2:280484/149‑1 (MQ=17)                             cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                 >  6:126201/1‑149 (MQ=17)                              acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                                <  1:376023/149‑1 (MQ=37)                              acTACCGCGACCCTGACGGCGAGCCCGGCGGTCACCGAAGCCGGCGTTATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CATACGCCGGTGACAGTTACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                                <  2:98406/149‑1 (MQ=11)                                caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCa                                                                                                              <  6:83573/148‑1 (MQ=9)                                   cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACTGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg                                                                                                           >  7:334193/1‑149 (MQ=255)                                     cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                            <  6:39869/130‑1 (MQ=32)                                     cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                            >  5:39869/1‑130 (MQ=32)                                       aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                                                                       <  7:87347/149‑1 (MQ=34)                                       aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                                                                       <  4:308751/149‑1 (MQ=12)                                       aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc                                                                                                         <  6:288868/147‑1 (MQ=255)                                        cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGAGTCGAt                                                                                                      >  2:133957/1‑149 (MQ=21)                                        cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac                                                                                                      <  4:373392/149‑2 (MQ=12)                                        cacTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                                                                       >  6:231308/3‑148 (MQ=12)                                           tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTTCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc                                                                                                   >  5:364157/1‑149 (MQ=11)                                             aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                   >  2:2805/1‑147 (MQ=34)                                             aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                   >  3:106390/1‑147 (MQ=34)                                             aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACTGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa                                                                                                 <  8:334193/149‑1 (MQ=255)                                                 cGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACGAAGGGCAGCGTCGATTTcccgccc                                                                                             >  6:272975/1‑144 (MQ=255)                                                  gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCGACAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAGAc                                                                                              >  1:114943/1‑149 (MQ=11)                                                    gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                               <  1:10089/144‑1 (MQ=255)                                                    gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                               >  2:10089/1‑144 (MQ=255)                                                     cccGTCGGTCTCCGAAGGCGGCGTGATCACTTACACCTTGACCCTCAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCTGGGCAGCGTCGATTTCCAGACCCCgg                                                                                         <  2:138732/149‑1 (MQ=255)                                                     cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                         <  5:231308/149‑1 (MQ=255)                                                           ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt                                                                                    <  8:313587/148‑1 (MQ=255)                                                            gTCACCGAAGGCGGGGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa                                                                                  >  7:335541/1‑149 (MQ=21)                                                               aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGAGACACTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCTGCGAATGACGt                                                                               >  2:154467/1‑149 (MQ=255)                                                                ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc                                                                                              <  1:345597/133‑1 (MQ=255)                                                                ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc                                                                                              >  2:345597/1‑133 (MQ=255)                                                                 cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc                                                                              >  6:55495/1‑148 (MQ=21)                                                                 cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc                                                                              >  7:285049/1‑148 (MQ=255)                                                                   aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac                                                                           <  5:272975/149‑1 (MQ=34)                                                                      gcggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaac                                                                        <  3:92640/149‑1 (MQ=34)                                                                        ggcgTGGTCACTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGCCCCCGGCGAATGACGTCTAcaacaa                                                                      >  7:139409/1‑149 (MQ=11)                                                                           gTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAATACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAGGACGTCTACAACAACgg                                                                   >  8:329847/1‑149 (MQ=17)                                                                              aTCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                 <  4:106390/148‑1 (MQ=34)                                                                              aTCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                 <  5:44052/148‑1 (MQ=34)                                                                                 aCTTACACCGTGCCCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGATGAAGCCGGAAAAACCCAGGGCAGCGTCGACTTCCAGACCCCTGCGAAtc                                                                                   >  5:243364/1‑126 (MQ=11)                                                                                 aCTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                              <  1:2805/148‑1 (MQ=34)                                                                                 aCTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAATACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                              <  5:5207/148‑1 (MQ=21)                                                                                  cTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                            >  8:31720/1‑149 (MQ=34)                                                                                  cTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                            >  4:158264/1‑149 (MQ=34)                                                                                  cTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                 >  4:331/1‑96 (MQ=11)                                                                                  cTTACACCGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                 <  3:331/96‑1 (MQ=11)                                                                                   ttACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                                                           >  8:6523/1‑149 (MQ=34)                                                                                       acCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac                                                                           <  5:172456/129‑1 (MQ=32)                                                                                       acCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac                                                                           >  6:172456/1‑129 (MQ=32)                                                                                        ccGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                            >  5:312500/1‑127 (MQ=32)                                                                                        ccGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                            <  6:312500/127‑1 (MQ=32)                                                                                        ccGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt                                                      <  7:31720/149‑1 (MQ=35)                                                                                         cGTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg                                                     >  2:212871/1‑147 (MQ=255)                                                                                          gTGACCCTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcgt                                                    <  8:285049/149‑1 (MQ=11)                                                                                              cccTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc                                                 >  3:5816/1‑148 (MQ=37)                                                                                               ccTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc                                                                <  8:305459/132‑1 (MQ=255)                                                                                               ccTGAGCAACCCTGCC‑‑CAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc                                                                >  7:305459/1‑132 (MQ=255)                                                                                               ccTGAGCAAACCTGCA‑‑CAGACTCCTGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCCGGCCAGCCTCCATTACCAGAACCCGCCGAATGACGTCTACAACAACGGTACCAGAGTCAGTCTCaac                                                >  2:393566/1‑146 (MQ=11)                                                                                                   aGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                             <  4:5816/147‑1 (MQ=37)                                                                                                      aaTCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa                                        <  3:158264/149‑1 (MQ=37)                                                                                                            gCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAc                                  >  1:275050/1‑149 (MQ=37)                                                                                                             cc‑‑cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACACCGCTTCGACTGGCAGTGTCACCATCGAGAACGCCAcc                                 >  3:62022/1‑149 (MQ=255)                                                                                                                   gtcGCCGGTGACAGTGACCCTGTCCAACGGGCAATCGATTACCGTTGAAGCCGGCAAAACGCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                             <  4:62022/147‑1 (MQ=255)                                                                                                                   gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGTTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                             <  1:123549/149‑1 (MQ=255)                                                                                                                       ccGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                              >  8:348476/1‑112 (MQ=255)                                                                                                                       ccGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                              <  7:348476/112‑1 (MQ=255)                                                                                                                        cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAt                        >  6:357172/1‑149 (MQ=39)                                                                                                                           tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc                     >  2:19992/1‑149 (MQ=39)                                                                                                                             accgTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACAAACCAGTACGCCACCGGCGGTAATTTCGa                   >  8:127737/4‑149 (MQ=1)                                                                                                                             aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa                   <  7:6523/149‑1 (MQ=39)                                                                                                                             aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa                   <  5:55495/149‑1 (MQ=255)                                                                                                                              cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg                  <  8:335541/149‑1 (MQ=38)                                                                                                                               aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg                  >  7:302482/1‑148 (MQ=38)                                                                                                                               aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg                  >  4:340309/1‑148 (MQ=38)                                                                                                                               aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg                  >  7:190551/1‑148 (MQ=38)                                                                                                                                 tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCaa               <  2:275050/149‑1 (MQ=37)                                                                                                                                   aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc                     <  3:5484/141‑1 (MQ=37)                                                                                                                                   aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc                     >  4:5484/1‑141 (MQ=37)                                                                                                                                            aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGa     >  2:287603/1‑148 (MQ=37)                                                                                                                                             aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt   <  1:19992/149‑1 (MQ=38)                                                                                                                                              cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc  <  1:393566/149‑1 (MQ=38)                                                                                                                                                       |                                                                                                                                            AGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCC‑‑CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATC  >  NC_002947/196203‑196490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑