Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,586,030 | 0 | C | T | 97.1% | 100.4 / ‑4.4 | 34 | intergenic (+113/+102) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (12/21); total (12/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
* | NC_002947 | 4,586,031 | 0 | T | C | 97.1% | 106.2 / ‑5.8 | 34 | intergenic (+114/+101) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (12/21); minor base G (0/1); total (12/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTCTGC‑GGTAAACCCGCTCCTACCAGGG‑A‑C‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAA > NC_002947/4585887‑4586110 || gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGTTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCATGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGC‑gg < 3:215812/149‑1 (MQ=255) gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGC‑gg > 8:305564/1‑149 (MQ=255) gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGC‑gg < 5:232923/149‑1 (MQ=255) gAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGC‑gggt > 1:196752/1‑146 (MQ=255) ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAAc > 3:250219/1‑149 (MQ=255) gAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGc < 2:138287/149‑1 (MQ=255) ccACCGGGGAAGGCTTAAGGGGAGACCTCGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTc < 4:250219/148‑1 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTa > 6:118971/1‑149 (MQ=255) ccGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTAc < 3:302616/149‑1 (MQ=255) tGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAgg < 3:339879/149‑1 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAggggcagcg > 2:21411/1‑143 (MQ=38) aCCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCAACCAGGG‑ACC‑CTGCCCGCCTTg > 5:338660/1‑148 (MQ=38) ccACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATTACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGaa < 7:305564/149‑1 (MQ=38) cGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATg‑c < 2:196752/149‑1 (MQ=39) cGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATg‑c > 7:228284/1‑149 (MQ=39) ccGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGgcgc < 3:40584/149‑1 (MQ=39) ccGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGgcgc < 5:118971/149‑1 (MQ=39) tGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCACTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGcccc < 2:318786/149‑1 (MQ=39) aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑G‑CAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGc > 7:175838/1‑149 (MQ=17) tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGc < 8:228284/148‑1 (MQ=39) tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCggg > 3:158798/1‑149 (MQ=38) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAg < 4:48892/143‑1 (MQ=38) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAg > 3:48892/1‑143 (MQ=38) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCgg < 6:338567/146‑1 (MQ=38) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCg < 4:308601/145‑1 (MQ=38) gctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑G‑CAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTAcc < 8:175838/149‑1 (MQ=14) ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTAccc < 4:158798/149‑1 (MQ=38) cATTGAACGGTGGAGGATGCCCGGGGGCTTGGCCAGGTGACGCTCTTGCAGTGCGCGGGCCGGCCG‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GGGCCGGCCTTGAAGG‑CGGCGCGGCCCCGGGTAGGAGCGGGGTTACCcg < 7:77434/147‑1 (MQ=16) ttGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGGGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGaa < 5:122637/149‑1 (MQ=38) ttGAAAGGTTGAGCCTGACGGGGGGCTTGGCATGGTGACTTGCTTGCTTTGATCGGGCCGGCCTGTTCGGG‑GGTAACCCCGCCCCTACCAGGGCC‑C‑GTGCCGGCGTTGAAGG‑GGGGGCTGCCCGTGGTAGGAGCGGGTTTACCCGCGaa < 6:338660/149‑1 (MQ=255) aaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAAt < 2:200240/107‑1 (MQ=37) aaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAAt > 1:200240/1‑107 (MQ=37) gTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTAccc < 4:329695/137‑1 (MQ=37) gTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTAccc > 3:329695/1‑137 (MQ=37) || GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCT‑CTCTGC‑GGTAAACCCGCTCCTACCAGGG‑A‑C‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAA > NC_002947/4585887‑4586110 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |