Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,634,523 | Δ1 bp | 7.1% | coding (985/1872 nt) | PP_2304 → | peptidyl‑prolyl cis‑trans isomerase D |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,634,523 | 0 | G | . | 7.1% | 178.6 / 6.7 | 56 | coding (985/1872 nt) | PP_2304 | peptidyl‑prolyl cis‑trans isomerase D |
Reads supporting (aligned to +/- strand): ref base G (24/28); new base . (2/2); total (26/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GACGCCCAGGCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGACAAACT > NC_002947/2634376‑2634668 | gACGCCCAGGCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGa < 2:143520/149‑1 (MQ=255) cccAGGCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCg < 3:25396/149‑1 (MQ=255) cccAGGCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGCGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCg < 4:105645/149‑1 (MQ=255) ggCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGTCGTATAC‑ACCCgggcc < 7:111736/149‑4 (MQ=255) aGGCCCGCGCCGAAGATATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGaa < 7:149470/149‑1 (MQ=255) aGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGaa < 2:72542/149‑1 (MQ=255) aGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGaa < 3:177673/149‑1 (MQ=255) gCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAaga < 6:293477/149‑1 (MQ=255) ccGCGCCGAAGAGATCGAGCAGCTTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAgg < 7:219313/149‑1 (MQ=255) gAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTa > 3:100602/1‑149 (MQ=255) aaGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGAcc > 8:40177/1‑126 (MQ=255) aaGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGAcc < 7:40177/126‑1 (MQ=255) aaGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTa > 8:434/1‑148 (MQ=255) tCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACCTGCTGCAGGATGGGc > 8:179871/1‑149 (MQ=255) tGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAg > 2:329158/1‑149 (MQ=255) gCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAgg > 1:166658/1‑148 (MQ=255) tGAGGACTTTGCCGCGTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCAc > 6:140946/1‑149 (MQ=255) gCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTgg < 2:294139/149‑1 (MQ=255) ccAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGc > 2:183226/1‑149 (MQ=255) cAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCt < 2:45175/149‑1 (MQ=255) cAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGCATGGGCAGGTATCTGAACCGGTGCGCACCGAGTTTgcc > 7:172165/1‑146 (MQ=255) gAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCa < 4:100602/149‑1 (MQ=255) ctctgATGACCCAGGCTCCGCCAACTCGGGTGGTGACCTCGGCTTTGCCGGCCCGTGT‑GTATAGGAGCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATc < 6:279712/146‑1 (MQ=255) ctctcAGGACCCAGGCTCCGCCAACACCGGTTGTGAACTCGGCTTTGCCGGCCCGGGT‑GTAAACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCCGTGCGCACCGAGTTTGGCTACCATc > 5:279712/1‑146 (MQ=255) tcAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATc > 4:280863/1‑148 (MQ=255) tcAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATc > 2:229117/1‑148 (MQ=255) tcAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATc > 1:160907/1‑148 (MQ=255) aGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATc < 1:183226/146‑1 (MQ=255) aGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCa < 7:434/147‑1 (MQ=255) gACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAgct > 3:30218/1‑149 (MQ=255) ccAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAgctgct > 6:32148/1‑149 (MQ=255) ccAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAgctgct > 6:16146/1‑149 (MQ=255) ccAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAgctgct > 8:94830/1‑149 (MQ=255) aGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTgg < 3:71224/149‑1 (MQ=255) gCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGc < 5:32148/149‑1 (MQ=255) ccGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGt > 8:174092/1‑106 (MQ=255) ccGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGt < 7:174092/106‑1 (MQ=255) gCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCa < 1:229117/149‑1 (MQ=255) aaCACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGgc < 5:16146/149‑1 (MQ=255) aaCACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAACCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATc > 2:42388/1‑124 (MQ=255) cGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGgcgc > 1:136373/1‑146 (MQ=255) cTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAg > 5:212044/1‑149 (MQ=255) ggCTTTGCCGGCCCGGGT‑GTATTCGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCTGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGc < 6:316359/147‑1 (MQ=255) tGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGcc < 8:167653/148‑1 (MQ=255) gaaggccGGGTCGTATAC‑ACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGc < 4:33493/111‑1 (MQ=255) gaaggccGGGTCGTATAC‑ACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGc > 3:33493/6‑116 (MQ=255) gaaggccGGGTCGTATAC‑ACCCGGCCTACGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGc > 2:312452/6‑149 (MQ=255) ccGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTg < 5:124187/90‑1 (MQ=255) ccGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTg > 6:124187/1‑90 (MQ=255) ccGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGc > 5:159080/1‑149 (MQ=255) cGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAg < 4:30218/149‑1 (MQ=255) gt‑gtATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGAc < 2:160907/149‑1 (MQ=255) gt‑gtATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGAc < 1:329158/149‑1 (MQ=255) tataCGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGACaaa < 3:280863/149‑1 (MQ=255) tataCGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGACaa < 5:140946/148‑1 (MQ=255) taCGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGACAAACt > 4:98682/1‑149 (MQ=255) | GACGCCCAGGCCAAGGCCCGCGCCGAAGAGATCGAGCAGCGTCTGGCCAAGGGTGAGGACTTTGCCGCTTTGGCCAAGGAGTTCTCTCAGGACCCAGGCTCCGCCAACACCGGTGGTGACCTCGGCTTTGCCGGCCCGGGT‑GTATACGACCCGGCCTTCGAAGAGGCGCTGTACAAGCTGCAGGATGGGCAGGTATCTGCACCGGTGCGCACCGAGTTTGGCTACCATCTGATCAAGCTGCTGGGCGTCCAGGCGCCAGAAGTACCGAGCTTCGCCAGCCTGAAGGACAAACT > NC_002947/2634376‑2634668 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |