Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,126,645 | 1 | . | C | 94.7% | 56.2 / ‑3.1 | 19 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (10/8); total (11/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGG > NC_002947/1126497‑1126770 | cTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTaaa < 8:232989/149‑1 (MQ=255) cgatgccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTTCCCGCGAATGCGGAGGTATAGCCCCCATAGCATTCGC‑GGGTAAACCCGCTccga > 4:238084/1‑147 (MQ=39) tgccgttCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTTACCGCGAATGCGGGGGTATAGCCACCATAGCATTAGC‑CGGTAAACCCGCTCCTaca > 7:299697/1‑148 (MQ=255) tCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTAACCCCCAA‑GCGGAGGTATATACACCATAGCAATATCGGGGTAAA‑ACCCTCCAAAAAAAAGcccccccccccac > 2:175889/1‑146 (MQ=255) aGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCg < 5:258863/147‑1 (MQ=255) gACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAg < 3:238084/149‑1 (MQ=255) cATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAggg < 7:8976/149‑1 (MQ=255) gg‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTg < 1:175889/149‑1 (MQ=255) g‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACAGAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGc > 5:103336/1‑149 (MQ=255) g‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGc > 5:108139/1‑149 (MQ=255) tACCGGCGAATGCGGAGGTATCGCCACCATCGCTTTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGGGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCgg < 6:92351/148‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAgg > 5:54721/1‑139 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAgg < 6:54721/139‑1 (MQ=255) ggAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGtt > 7:133971/1‑149 (MQ=255) aGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt > 3:29062/1‑149 (MQ=255) ccaccaTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 5:266674/101‑1 (MQ=255) ccaccaTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc > 6:266674/1‑101 (MQ=255) ccaccaTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTCGTCGACCCgg > 4:195539/1‑149 (MQ=255) aTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGc > 2:307306/1‑100 (MQ=255) aTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGc < 1:307306/100‑1 (MQ=255) | CTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGG > NC_002947/1126497‑1126770 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |