Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,497,336:1 +G 7.7% coding (261/765 nt) PP_5562 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,497,3361.G 7.7% 198.3 / 11.4 52coding (261/765 nt)PP_5562hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (26/22);  new base G (2/2);  total (28/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01

CGAAGGCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGATCAGCGGTGCCACGGTG  >  NC_002947/3497191‑3497483
                                                                                                                                                  |                                                                                                                                                   
cGAAGGCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGc                                                                                                                                                  >  3:9915/1‑149 (MQ=255)
 gAAGGCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGc                                                                                                                                                  >  3:57771/1‑148 (MQ=255)
 gAAGGCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGc                                                                                                                                                  <  4:57771/148‑1 (MQ=255)
     gCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGaa                                                                                                                                             >  8:220727/1‑149 (MQ=255)
           aaGCCCAGCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGgcgc                                                                                                                                       <  4:292889/149‑1 (MQ=255)
           aaGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGgcgc                                                                                                                                       <  2:181981/149‑1 (MQ=255)
            aGCCCACCACCCTGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGcgcg                                                                                                                                      <  8:147438/149‑1 (MQ=255)
              cccACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGgc                                                                                                                                    <  3:9126/149‑1 (MQ=255)
               ccaccaCCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGgcc                                                                                                                                   >  4:41456/1‑149 (MQ=255)
               ccaccaCCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGgcc                                                                                                                                   >  4:305986/1‑149 (MQ=255)
                caccacCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTGGTCACCGAGCTgg                                                                                                                                               <  4:245177/136‑1 (MQ=255)
                caccacCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTGGTCACCGAGCTgg                                                                                                                                               >  3:245177/1‑136 (MQ=255)
                       cAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGGGGGAACAGTTCGGGGGTGGCGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGAt                                                                                                                           <  6:70904/149‑1 (MQ=255)
                            ggTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGtt                                                                                                                      >  4:160392/1‑149 (MQ=255)
                                  gCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTa                                                                                                                  >  1:329278/1‑147 (MQ=255)
                                             ggATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAgg                                                                                                     <  7:37503/149‑1 (MQ=255)
                                                tGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGTGAACAGTTCGGGTGTGGTGCTGATCAGGTTCAGCGTTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGcc                                                                                                  <  4:186639/149‑1 (MQ=255)
                                                   ccTGGCCGCTTTGTTCGAGTGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTgg                                                                                               <  3:68830/149‑1 (MQ=255)
                                                     tGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTgg                                                                                               >  1:285314/1‑147 (MQ=255)
                                                       gCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGt                                                                                           >  3:234355/1‑149 (MQ=255)
                                                         cGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTgg                                                                                         >  7:290286/1‑149 (MQ=255)
                                                         cGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTgg                                                                                         >  5:159949/1‑149 (MQ=255)
                                                              tgtTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTg                                                                                    <  7:220727/149‑1 (MQ=255)
                                                                ttCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTggg                                                                                  >  6:218038/1‑149 (MQ=255)
                                                                ttCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTggg                                                                                  >  2:309850/1‑149 (MQ=255)
                                                                ttCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTgg                                                                                   <  4:9915/148‑1 (MQ=255)
                                                                        tCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGAGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCgcgc                                                                          >  5:211986/1‑149 (MQ=255)
                                                                            gTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTg                                                                                                >  6:99619/1‑123 (MQ=255)
                                                                            gTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTg                                                                                                <  5:99619/123‑1 (MQ=255)
                                                                             tCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGACCGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCgct                                                                     >  8:81210/1‑149 (MQ=255)
                                                                               gTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTcgc                                                                            <  3:266668/140‑1 (MQ=255)
                                                                               gTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTcgc                                                                            >  4:266668/1‑140 (MQ=255)
                                                                                    ccAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTgcg                                                               <  3:321754/148‑1 (MQ=255)
                                                                                      aGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCtg                                                            >  8:54442/1‑149 (MQ=255)
                                                                                         gggAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTgc                                                         >  1:28150/1‑149 (MQ=255)
                                                                                            aaCAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGcc                                                      <  1:309850/149‑1 (MQ=255)
                                                                                               aGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTg                                                   <  2:285314/149‑1 (MQ=255)
                                                                                                gTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTg                                                   >  1:39537/1‑148 (MQ=255)
                                                                                                gTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGc                                                  <  8:290286/149‑1 (MQ=255)
                                                                                                gTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGc                                                  <  3:305986/149‑1 (MQ=255)
                                                                                                 ttCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCa                                                 <  3:41456/149‑1 (MQ=255)
                                                                                                  tCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAg                                                <  4:234355/149‑1 (MQ=255)
                                                                                                   cGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAg                                                <  7:219643/148‑1 (MQ=255)
                                                                                                             gCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCa                                      >  6:102218/1‑148 (MQ=255)
                                                                                                                       ttCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTg                           >  6:52404/1‑149 (MQ=255)
                                                                                                                           gCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGcgga                       >  7:26271/1‑149 (MQ=255)
                                                                                                                            cGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGcggac                      <  8:26271/149‑1 (MQ=255)
                                                                                                                                 cTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGAt                  >  2:339964/1‑148 (MQ=255)
                                                                                                                                  ttCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGAt                  >  3:201020/1‑147 (MQ=255)
                                                                                                                                  ttCCAGCTGGTCACCGAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGcg                         >  3:234659/1‑140 (MQ=255)
                                                                                                                                  ttCCAGCTGGTCACCGAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGcg                         <  4:234659/140‑1 (MQ=255)
                                                                                                                                               aCCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGATCAGCGGTGCCACGGt   >  3:5062/1‑149 (MQ=255)
                                                                                                                                                ccAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGATCAGCGGTGCCACGGTg  <  6:159949/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CGAAGGCGTGGAAGCCCACCACCCAGCGGGTCGGGCTGGTGATGCGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCTGGAAGTGGCCCTGGGTTTCGCGCCCGCTGCTGCGCTGTGCGCCTTGCAGGTATTCGCCAAACAGGGTTTGCGGACGGATCAGCGGTGCCACGGTG  >  NC_002947/3497191‑3497483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: