| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 92.1% | 113.3 / 4.1 | 38 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (17/18); total (18/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTA > NC_002947/278599‑278867 | cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑T‑aaac < 2:130270/148‑3 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAATGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGc < 1:245500/148‑1 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGc < 2:35998/147‑1 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTc < 8:26032/149‑1 (MQ=255) gCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTcc > 7:85617/1‑148 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTa < 2:26605/149‑1 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGACGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTa > 3:29092/1‑149 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTac < 4:319850/147‑1 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTacaca < 8:177181/149‑1 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTAcacaca > 7:5552/1‑149 (MQ=255) cgACATACGTGTGCTGGTCCGGTTGTCCGGTATATATACCCTTATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGTGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACAt < 5:165799/149‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAg < 4:29092/149‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 3:175953/147‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGACGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTGCTACCCACATGCCTCAAGATCTGTGGACt > 6:310050/1‑149 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 7:247888/149‑1 (MQ=255) ataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGACGGGCTCTTCGCGG‑C‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTATGCACTGTAGGAGAGGGTTTAc > 6:264191/1‑149 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGtaaacc > 3:42910/1‑144 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg > 8:95655/1‑140 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 7:95655/140‑1 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAggg > 5:110055/1‑149 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTAAACCcgctcctaca < 4:42910/148‑8 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑ACCGCTGCTACACAAATGCCTCAAGATCTGTGCACTGTAGGAGAGGGTTTACCCGCGAAAGGGc > 5:271287/1‑149 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑ACCCCAACTAAAAAAAATACTCAAAATCAGTGCACAGTAGGATCGGGTTTAACCGCGAAAGGGc > 3:284484/1‑149 (MQ=255) ttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCGCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGcc > 8:119927/1‑149 (MQ=255) ttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCCCACCGACCCACAAGCCGCAAAATCTGTTGACGGTAGGAGCGGGGTTTGCCGCGAAATGGcc > 2:335757/1‑149 (MQ=255) ataAAATTTTTATGAAATAACTTTTTGTAATATTTATAGAT‑GGGGTATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑T‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg < 6:271287/148‑1 (MQ=255) aactaactTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCATACACACATGCCTCATGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc < 7:95400/148‑1 (MQ=255) taactTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg > 8:220399/1‑111 (MQ=255) actTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 4:189759/109‑1 (MQ=255) ctTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑GTT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACACGCGAAAGGGCCGGCAACGGTTTAAGCGGAGGcc > 7:116619/1‑149 (MQ=255) ttttGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg > 5:170595/1‑148 (MQ=255) aaTATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTACTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTccc > 6:11233/1‑149 (MQ=255) tatTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGGACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTTCTCGGAGGCCGCTGTcgc > 4:216368/1‑145 (MQ=39) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 8:85617/149‑1 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑T‑AACCCCGCTCCTACACACATGCCTCAAGATCTGTCCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 5:310050/149‑1 (MQ=255) cAGAGTTCCGGGGCTCTTGCCGG‑T‑TAAA‑CCGGCTCCTCCACACATGCCCCAAGTCCTGGCAAGTTTCGTCGCGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 4:284484/148‑1 (MQ=255) cAGAGGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgcg > 7:182594/1‑149 (MQ=255) cccggTGCCGGGCTATTCCCGGTA‑A‑AA‑CCCGCGCCCACACCCCTGCCCCACGCTCTGGGCACTGTAGGCCGGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGt < 5:4771/146‑1 (MQ=255) gagGTGCCGGGCTCTTCGCGG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTa < 7:119927/149‑1 (MQ=255) | CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGG‑G‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTA > NC_002947/278599‑278867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |