New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	64118 =	55 (1.020)	3 (0.060)	3/252	NT	5.5%	coding (598/888 nt)	PP_0055	transcriptional regulator
	?	NC_002947	64171 =	51 (0.990)					coding (545/888 nt)	PP_0055	transcriptional regulator

CACCGCGAAGACCTGGCCCGGCACAGCTGGATCGGCTACGTTGACGATTTGCTGTTCAGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/64181‑64118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGAG  >  NC_002947/64171‑64316                                                                                                                                                                                                                    CACCGCGAAGACCTGGCCCGGCACAGCTGGATCGGCTACGTTGACGATTTGCTGTTCAGCCAGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGG                                                               >  7:112929/1‑149      CGAAGACCTGGCCCGGCACAGCTGGATCGGCTACGTTGACGATTTGCTGTTCAGCCAGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGGGAGTTTGCGGGTGAT                                                           >  3:211164/1‑148                     GCACAGCTGGATCGGCTACGTTGACGATTTGCTGTTCAGCCAGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTG                                           <  8:112929/149‑1                                                             CAGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGA   <  3:313114/149‑1                                                             CAGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGA   <  4:211164/149‑1                                                              AGGTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGAG  >  3:33332/1‑149                                                              AGGTCTTCGCGGTGGCACAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGAG  <  5:298426/149‑1                                                              AGGTCATCGCTGTGGCGCAGGGGCGGCGCGCGGGCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGGTTGCGGGGGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGAG  <  6:339944/149‑1                                                                                                                                                                                                                    CACCGCGAAGACCTGGCCCGGCACAGCTGGATCGGCTACGTTGACGATTTGCTGTTCAGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/64181‑64118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggTCTTCGCGGTGGCGCAGTGGCGGCGCGCGGTCCAGGTAGGCCTGGCTGGCGTATAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTGATCAGCAGATCGGCGTTGGGCCGCTCCAGATGGATGCTGATTTCTGCCTCGCGGTTGAG  >  NC_002947/64171‑64316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.