New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 587169	54 (1.000)	4 (0.080)	3/248	NT	7.5%	coding (221/810 nt)	PP_0497	Cro/CI family transcriptional regulator
	?	NC_002947	= 587206	48 (0.950)					coding (258/810 nt)	PP_0497	Cro/CI family transcriptional regulator

CCGCCAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/587017‑587169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgatcggGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGCCC  <  NC_002947/587206‑587063                                                                                                                                                                                                                                                                                                           CCGCCAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAACAGTTCGCCCGTCTGA                                                                                                                                                      >  1:286577/1‑149  CGCCAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGAT                                                                                                                                                     <  7:61969/149‑1   GCCAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATC                                                                                                                                                    >  4:91586/1‑149     CAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGG                                                                                                                                                  >  6:77350/1‑149                                               GGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGAT                                                                                                        <  3:261389/149‑1                                                GGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATC                                                                                                       <  7:181477/149‑1                                                GGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATC                                                                                                       <  7:186397/149‑1                                                    AAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGAC                                                                                                   <  5:297964/149‑1                                                                                                                                                   TGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGT                 <  5:283058/136‑1                                                                                                                                                   TGATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGT                 >  6:283058/1‑136                                                                                                                                                     ATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGCCC  >  3:226155/1‑149                                                                                                                                                     ATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGCCC  >  7:220272/1‑149                                                                                                                                                     ATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGC    <  8:90262/147‑1                                                                                                                                                     ATCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCCGACGGCTTTcaa   <  1:322498/148‑4                                                                                                                                                      TCGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGCCC  <  3:190447/148‑1                                                                                                                                                       CGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGC    <  7:240288/145‑1                                                                                                                                                       CGGGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGC    >  8:240288/1‑145                                                                                                                                                                                                                                                                                                           CCGCCAGCTGTCGATCAACCGCGCGCAGTTCAACAAGTACCTGAGCGGGCAAAGCCGTCCGACGGCTTTCAACCTGAAGCGTATCGGCGACTTCTTCGGTGTCGAGGATTACGAACTGAACCTGCCCGCCGAGCAGTTCGCCCGTCTGATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/587017‑587169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgatcggGTCACTGGGTTGCTGGGCCTGGGGCGATACCCGCGCACCGATCAGACGGGCGAACTGCTCGGCGGGCAGGTTCAGTTCGTAATCCTCGACACCGAAGAAGTCGCCGATACGCTTCAGGTTGAAAGCCGTCGGACGGCTTTGCCC  <  NC_002947/587206‑587063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.