New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	636596 =	55 (1.020)	4 (0.080)	4/252	NT	6.9%	coding (820/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	636651 =	55 (1.070)					coding (875/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

TCACACCTTGTACTTCGGCAACCTTCTCCATGCGCCGCTTGACGCTCTTGAACGCACTCAGGCCGTCGATGCCCATGGCCGGTACCACCCCTACATGACGCGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/636749‑636596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCT  >  NC_002947/636651‑636798                                                                                                                                                                                                                                                                                                                TCACACCTTGTACTTCGGCAACCTTCTCCATGCGCCGCTTGACGCTCTTGAACGCACTCAGGCCGTCGATGCCCATGGCCGGTACCACCCCTACATGACGCGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTC                                                                                                                                                           <  1:301717/149‑1   ACACATTGTACTACGGCAACCTTCTCCATGCGCCGCTTGACGCTCTTGAACGCACTCAGGCCGTCGATGCCCATGGCCGGTACCACCCCTACATGACGCGCTTCTGCCAGGGTAGCCAAGGAATTGACGACGTTGTGCAGGCCGGTCAG                                                                                                                                                         >  5:347145/1‑149                                                                                               ATGACGCGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTA                                                             >  1:339012/1‑149                                                                                                   CGCGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAG                                                         >  3:132924/1‑149                                                                                                     CGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGT                                                       <  2:339012/149‑1                                                                                                                     GCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATG                                       <  4:132924/149‑1                                                                                                                                                          CGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCT  >  4:69553/1‑149                                                                                                                                                                                                                                                                                                                TCACACCTTGTACTTCGGCAACCTTCTCCATGCGCCGCTTGACGCTCTTGAACGCACTCAGGCCGTCGATGCCCATGGCCGGTACCACCCCTACATGACGCGCTGCTGCCAGGGTAGCCAAGGCATTGGCGACGTTGTGCTGGCCGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/636749‑636596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCT  >  NC_002947/636651‑636798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.