New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 989423	54 (1.000)	4 (0.080)	4/250	NT	6.9%	coding (1275/1290 nt)	hisS	histidine‑‑tRNA ligase
	?	NC_002947	= 989438	57 (1.120)					coding (1290/1290 nt)	hisS	histidine‑‑tRNA ligase

GTTCAAGAAAGCCGACAAGAGCGGTGCACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/989270‑989423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgcgTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAACAGTGCAC  <  NC_002947/989438‑989293                                                                                                                                                                                                                                                                                                              GTTCAAGAAAGCCGACAAGAGCGGTGCACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAA                                                                                                                                                         >  7:212448/1‑149     AAGAAAGCCGACAAGAGCGGTGCACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGC                                                                                                                                                     >  2:61216/1‑149     AAGAAAGCCGACAAGAGCGGTGCACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCG                                                                                                                                                      <  2:322455/148‑1                            ACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCGTTACGCTTGCGCGATCGCGGTT                                                                                                                              <  7:83006/149‑1                                      CTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCGTTACGCTTGCGCGATCGCGGTTTCCAGGTGCT                                                                                                                    <  1:14032/149‑1                                                                                      CCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCGTTACGCTTGCGCGATCGCGGTTTCCA                                                                                                                          <  1:11024/95‑1                                                                                      CCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCGTTACGCTTGCGCGATCGCGGTTTCCA                                                                                                                          >  2:11024/1‑95                                                                                                                                                    AACCGCGTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAACAGT      >  6:26946/1‑149                                                                                                                                                    AACCGCGTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGATCGTCTACGCCGAGGATCAGGGCGAACAtt      >  4:14571/1‑147                                                                                                                                                       CGCGTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAACAGTGCA   <  6:180055/149‑1                                                                                                                                                        GCGTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAACAGTGCAC  <  3:326962/149‑1                                                                                                                                                          GTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAA          <  5:332794/139‑1                                                                                                                                                          GTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAA          >  6:332794/1‑139                                                                                                                                                                                                                                                                                                              GTTCAAGAAAGCCGACAAGAGCGGTGCACTGTTCGCCCTGATCCTCGGCGACGACGAGCTGGCCAAGCAAGAAATCGGCTTGAAGCCCCTGCGTGGCCAGGGTGAACAACAGAACATTGCCTGGGATGCTCTTGCAGAGCACCTGGAAACCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/989270‑989423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgcgTTACGCTTGCGCGATCGCGGTTTCCAGGTGCTCTGCAAGAGCATCCCAGGCAATGTTCTGTTGTTCACCCTGGCCACGCAGGGGCTTCAAGCCGATTTCTTGCTTGGCCAGCTCGTCGTCGCCGAGGATCAGGGCGAACAGTGCAC  <  NC_002947/989438‑989293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.