| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1192239 = | 51 (0.950) | 3 (0.060) | 3/248 | NT | 5.9% | coding (1411/2076 nt) | upxB | phosphatase |
| ? | NC_002947 | 1192310 = | 48 (0.950) | coding (1340/2076 nt) | upxB | phosphatase | |||||
ACCAAGGCAAGCTCTACGTGGCCCGCTTCAATGCCGACGGCACCGGTGTATGGCTGCTGCTGGACGTGGCCACCGCCACCACCGCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1192391‑1192239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcgGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCACACGG > NC_002947/1192310‑1192454 ACCAAGGCAAGCTCTACGTGGCCCGCTTCAATGCCGACGGCACCGGTGTATGGCTGCTGCTGGACGTGGCCACCGCCACCACCGCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCC > 6:313747/1‑149 CCAAGGCAAGCTCTACGTGGCCCGCTTCAATGCCGACGGCACCGGTGTATGGCTGCTGCTGGACGTGGCCACCGCCACCACCGCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCG > 2:289910/1‑149 CACCGCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTG > 5:119951/1‑149 GCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTT > 8:123216/1‑149 GGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTG < 7:123216/148‑1 TGCCGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCAC > 1:171000/1‑149 CCGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCACAC > 1:178315/1‑149 CGGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCACACG < 7:199770/149‑1 GGCGGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCACACGG < 5:149174/149‑1 ACCAAGGCAAGCTCTACGTGGCCCGCTTCAATGCCGACGGCACCGGTGTATGGCTGCTGCTGGACGTGGCCACCGCCACCACCGCCGGCAGCACCCTGGGTGCGCTGTATGGTGACCTGCCGGGCATCATCCTCAACACCCGTGGTGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1192391‑1192239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcgGTGGTGGCGGTGGCCACGTCCAGCAGCAGCCATACACCGGTGCCGTCGGCATTGAAGCGGGCCACGTAGAGCTTGCCTTGGTCGAGGTACTTGGCGCCGGTGGCCAGGCGGTCGGCCGGGGTGGCGTCGGCGGGGTCCCACACGG > NC_002947/1192310‑1192454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |