| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1821235 | NA (NA) | 12 (0.220) | 5/264 | NT | NA | coding (998/1422 nt) | PP_1624 | group II intron‑encoding maturase |
| ? | NC_002947 | = 2070688 | NA (NA) | coding (1062/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821088‑1821235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGG < NC_002947/2070688‑2070620 CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGG > 5:262542/1‑149CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGG < 5:312642/149‑1 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGC > 7:307940/1‑149 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGC > 7:248501/1‑149 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGC > 6:29933/1‑149 GGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTG > 2:246588/1‑149 GGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGC > 8:19597/1‑149 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGC < 1:328393/149‑1 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGC < 7:67801/149‑1 CGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCTTGGCTGCtgg < 2:276323/149‑4 TGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG > 6:285028/1‑149 GGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGtc < 7:215985/149‑3 GGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATCGTATTAGCTGGCACCAGCAGCCAAGAATGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGtg < 7:215989/149‑3 TGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT > 6:180185/1‑149 GAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGCAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTG < 7:88032/149‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 5:180185/148‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGG < 5:285028/149‑1 ACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGG < 6:88313/148‑1 AAGTGGCAAGGGCATGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 7:283933/131‑1 AAGTGGCAAGGGCATGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT > 8:283933/1‑131 CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821088‑1821235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGG < NC_002947/2070688‑2070620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |