New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2057823	20 (0.370)	6 (0.140)	6/216	NT	24.8%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057863	20 (0.450)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein

GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2057652‑2057823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCC  <  NC_002947/2057863‑2057718                                                                                                                                                                                                                                                                                                                                GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGC                                                                                                                                                                           >  7:276372/1‑149        TGGGTTGAGTTGGGTGATACAGCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTAGCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG                                                                                                                                                                    <  3:191659/149‑1         GGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGG                                                                                                                                                                   <  8:276372/149‑1                    GGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTC                                                                                                                                                        <  1:304306/149‑1                     GTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCC                                                                                                                                                       >  7:243179/1‑149                        ATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                     >  6:260348/1‑148                             CCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG                                                                                                                                                                    >  3:107650/1‑128                             CCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG                                                                                                                                                                    <  4:107650/128‑1                                                                 CAGGGCATGCAGGCTCGTGTTACGTGCGTTGTGACTGCGCTGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATG                                                                                                           <  6:48800/149‑1                                                                    GGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACC                                                                                                                                                             <  3:231105/96‑1                                                                    GGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACC                                                                                                                                                             >  4:231105/1‑96                                                                      CATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAG                                                                                                        >  6:39007/1‑147                                                                        TGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGC                                                                                                    <  5:39007/149‑1                                                                            GGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGT                                                                                                <  1:216068/149‑1                                                                                                    TGCGCGGGCATTTCTTAGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCG                                                                                                   >  8:7096/1‑122                                                                                                    TGCGCGGGCATTTCTTAGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCG                                                                                                   <  7:7096/122‑1                                                                                                                                                                     GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATTCCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCA       <  1:76271/149‑1                                                                                                                                                                          TACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCC  >  6:128557/1‑149                                                                                                                                                                                                                                                                                                                                GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2057652‑2057823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCC  <  NC_002947/2057863‑2057718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.