New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3092867	59 (1.100)	3 (0.060)	3/250	NT	5.0%	coding (828/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	= 3092935	58 (1.140)					coding (896/939 nt)	PP_2701	LysR family transcriptional regulator

TGATGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3092713‑3092867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCAGATTGATGGGGTAATCCGGAATCAACTCCTGCACCGCCATGGCGACGAACTCGCAATCGATACCGTAGGTA  <  NC_002947/3092935‑3092789                                                                                                                                                                                                                                                                                                                TGATGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTG                                                                                                                                                           >  7:74366/1‑149    TGATGGGGCTGAAGCTGTTGAAGAACGCGGAATGGTTGATGACCATCAGCGAACTGGCGGTGGACCAATGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTC                                                                                                                                                        <  3:137431/149‑1    TGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGCCCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTCTCGATTGCGAGTTCGTCGCCAGGGCGGTGCAGGAGTTGTTTGAGGCTTGCCCCATCATTCTGGTC                                                                                                                                                        >  8:313210/1‑149                        AAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGT                                                                                                                                                         >  5:57873/1‑128                        AAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGT                                                                                                                                                         <  6:57873/128‑1                                                                      AAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGG                                                                                      >  3:297453/1‑149                                                                               CCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCA                                                                              <  3:100254/148‑1                                                                                     GTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCAGA                                                                       <  4:297453/149‑1                                                                                                                                                     GGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCAGATTGATGGGGTAATCCGGAATCAACTCCTGCACCGCCATGGCGACGAACTCGCAATCGATACCGT       <  4:88476/149‑1                                                                                                                                                           CTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCAGATTGATGGGGTAATCCGGAATCAACTCCTGCACCGCCATGGCGACGAACTCGCAATCGATACCGTAGGTA  >  5:174279/1‑148                                                                                                                                                                                                                                                                                                                TGATGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3092713‑3092867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCAGATTGATGGGGTAATCCGGAATCAACTCCTGCACCGCCATGGCGACGAACTCGCAATCGATACCGTAGGTA  <  NC_002947/3092935‑3092789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.