New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3222162 =	54 (1.000)	3 (0.060)	3/254	NT	5.5%	coding (532/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3222195 =	52 (1.000)					coding (499/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

CCCAGGCGCTCGGCGAGCAGTTTCGCAGCCACGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3222197‑3222162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGCGTTATCGGCGTAGCGCTTGATCGCCGCCGACCAGGCTTGAATTTCCCGGTGT  >  NC_002947/3222195‑3222340                                                                                                                                                                                        CCCAGGCGCTCGGCGAGCAGTTTCGCAGCCACGCCTGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGC                                                      <  7:32579/130‑1 CCCAGGCGCTCGGCGAGCAGTTTCGCAGCCACGCCTGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGC                                                      >  8:32579/1‑130  CCAGGCGCTCGGCGAGCAGTTTCGCAGCCACGCCTGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGCGTTATCGGCGTAGCGCTTGA                                  >  1:200332/1‑149                                  CCTGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGCGTTATCGGCGTAGCGCTTGATCGCCGCCGACCAGGCTTGAATTTCCCGGTGT  <  8:93478/149‑1                                                                                                                                                                                        CCCAGGCGCTCGGCGAGCAGTTTCGCAGCCACGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3222197‑3222162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctGGGCGTTCTTGAGGTCGCTGGCCATGCGATCAAAATGGGGGCGTAAATCATCGAACGCCGCCCCATCGAGCAGTTGCCCGGAGGAGGCGAACGCGTTATCGGCGTAGCGCTTGATCGCCGCCGACCAGGCTTGAATTTCCCGGTGT  >  NC_002947/3222195‑3222340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.