| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3816242 = | 63 (1.170) | 5 (0.100) | 5/250 | NT | 8.0% | coding (579/702 nt) | cpxR | two‑component system regulator CpxR |
| ? | NC_002947 | 3816291 = | 56 (1.100) | coding (530/702 nt) | cpxR | two‑component system regulator CpxR | |||||
TCAGCTGGTCAGCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3816296‑3816242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaccAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGC > NC_002947/3816291‑3816438 TCAGCTGGTCAGCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCC > 7:244494/1‑149 GCTGGTCAGCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCG > 7:218401/1‑149 TGGTCAGCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGC > 5:70913/1‑149 GCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATT < 8:218401/149‑1 GGCCGGCCGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAG < 6:70913/148‑1 CTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGG < 2:84841/149‑1 CTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGG < 4:240797/148‑1 CTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGG < 8:95950/148‑1 ACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGC > 1:124298/1‑149 ACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGC > 4:230358/1‑149 ACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGC > 6:293190/1‑149 CAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGC > 8:58442/1‑149 CAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGCCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCG > 4:313111/1‑148 TCAGCTGGTCAGCAAGCAGGACCTGTCGCTCAATGCCCTGGGCCGGCCGCTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3816296‑3816242‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaccAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTGAACTCGGAGCCGGTCAATTCCAGCGTGGCTGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGC > NC_002947/3816291‑3816438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |