| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3974208 | 49 (0.910) | 5 (0.100) | 5/250 | NT | 9.0% | coding (265/1326 nt) | PP_3503 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 3974250 | 55 (1.080) | coding (223/1326 nt) | PP_3503 | sigma‑54 dependent transcriptional regulator | |||||
CGAGCAACTCATGGGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3974055‑3974208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgaaTGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCGCTT < NC_002947/3974250‑3974105 gagGCAACCCATGAGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCA > 6:203419/4‑149CGAGCAACTCATGGGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCA > 3:312230/1‑149CGAGCAACTCATGGGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCA < 5:258859/149‑1 CAACTCATGGGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACCCACAAAATCACCG > 4:296988/1‑148 GCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGAT < 3:167288/149‑1 CGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACAGAAAATCACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATT < 2:64962/143‑1 CGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATT > 1:64962/1‑143 CCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTG > 1:15019/1‑141 CCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTG < 2:15019/141‑1 CACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCTGGGCCTTCGGCATGGCGC < 5:79495/149‑1 ACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGGGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCG > 6:288523/1‑149 ACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCG < 4:7468/149‑1 ACCGAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCG > 5:74656/1‑149 GAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCGCTT > 3:186993/1‑149 GAATGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCGCTT > 7:289585/1‑149 CGAGCAACTCATGGGTTGCCTCATCGACCTTGACGGCCCCCTTGCCGCGCAAGCGCGCCATGCCGAAGGCCCGGCCCAGGGTTACCTGCACGCGGGAGACGTCGAACGGCAGGGTATGGAAGTCGAAAAACCACTCACACACAAAATCACCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3974055‑3974208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgaaTGGATTGCCGTGCTCAGCGCCGATCAGTTGCGCATGCCGGCGTTCGGTGATTTTGTGTGTGAGTGGTTTTTCGACTTCCATACCCTGCCGTTCGACGTCTCCCGCGTGCAGGTAACCCTGGGCCGGGCCTTCGGCATGGCGCGCTT < NC_002947/3974250‑3974105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |