New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4246086	65 (1.210)	8 (0.160)	7/252	NT	11.8%	coding (189/1230 nt)	alr	alanine racemase
	?	NC_002947	= 4246121	58 (1.130)					coding (154/1230 nt)	alr	alanine racemase

GCCACTGGCGCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4245936‑4246086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccag‑‑cGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCGGCAAGTCCAAGCTGTGCGCCGTGCTCAAGGCCGATGCCTATGGCCACGGTATCGGCCTGGTAATGCCATCGATCATCGCCCAAGGCGTGCCCTGCGTGGCGG  <  NC_002947/4246121‑4245977                                                                                                                                                                                                                                                                                                            GCCACTGGCGCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGCCTTGCCGGC                                                                                                                                                         >  5:276162/1‑147   CACTGGCGCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑C                                                                                                                                                   >  1:243706/1‑149          GCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGC                                                                                                                                                         <  7:281451/138‑1          GCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGC                                                                                                                                                         >  8:281451/1‑138                                    TGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGCCCTGCGGCACAACATCCGCACGCTGCAGG                                                                                                                    >  8:293612/1‑149                                     GGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCC                                                                                                                  >  6:129901/1‑148                                      GCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGCCCTGCGGCACAACATCCGCACGCTGCAGGC                                                                                                                   <  7:293612/148‑1                                           CGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGG                                                                                                           <  5:129901/149‑1                                              CACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCG                                                                                                        <  5:221397/149‑1                                              CACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCG                                                                                                        <  6:12938/149‑1                                                          GCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGC                                                                                                          <  1:256756/135‑1                                                          GCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGC                                                                                                          >  2:256756/1‑135                                                                                                                                                  GCCAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCGGCAAGTCCAAGCTGTGCGCCGTGCTCAAGGCCGATGCCTATGGCCACGGTATCGGCCTGGTAATGCCATCGATCATCGCCCAAGGCGTGCCCTGCGTGGC    <  3:37542/149‑1                                                                                                                                                    CAG‑‑CGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCGGCAAGTCCAAGCTGTGCGCCGTGCTCAAGGCCGATGCCTATGGCCACGGTATCGGCCTGGTAATGCCATCGATCATCGCCCAAGGCGTGCCCTGCGTGGCGG  >  7:172151/1‑149                                                                                                                                                                                                                                                                                                            GCCACTGGCGCGGACCACGCGGGCCTCCTCGTTGCTGGCCACCGCCACGCAGGGCACGCCTTGGGCGATGATCGATGGCATTACCAGGCCGATACCGTGGCCATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAG‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4245936‑4246086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccag‑‑cGCCCTGCAGCACAACATCCGCACGCTGCAGGCCGAGCTGGCCGGCAAGTCCAAGCTGTGCGCCGTGCTCAAGGCCGATGCCTATGGCCACGGTATCGGCCTGGTAATGCCATCGATCATCGCCCAAGGCGTGCCCTGCGTGGCGG  <  NC_002947/4246121‑4245977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.