New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4446338	55 (1.020)	6 (0.120)	6/250	NT	10.2%	coding (82/807 nt)	nicD	N‑formylmaleamate deformylase
	?	NC_002947	= 4446384	53 (1.040)					coding (36/807 nt)	nicD	N‑formylmaleamate deformylase

AAGCGTCGGTGCCGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4446185‑4446338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGATCCTGGTGCCGGGCATCACCAGCCCAGCGATCACCTGGGGCTTTGTCGCCGAGCGCCTTGGGCATTATTTCGACACCTATGTGCTGGAT  <  NC_002947/4446384‑4446243                                                                                                                                                                                                                                                                                                          AAGCGTCGGTGCCGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGAT                                                                                                                                                      >  6:342399/1‑148    CGTCGGTGCCGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGC                                                                                                                                                  <  5:342399/149‑1     GTCGGTGCCGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCG                                                                                                                                                 >  2:179447/1‑149             CGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGAGCCAATGG                                                                                                                                          >  8:215327/1‑148                       GTCGGGGCCGCATGAAGACAAGCCACGCCCGCGCACCACCAGCACATAGGTGTCGAAAAAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGCCAATGCCATCCGCCAG                                                                                                                                >  2:50655/1‑148                                GCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGCCAATGGCATCCGCCAGCATTACCTGC                                                                                                                      >  2:7343/1‑149                                                         ACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGGCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCTCCAGGTTGAGCGCCAATGGCATCCGCCTGGATTACCTGCGCTATGGCGGCAAGGGCCATGCGCT                                                                                             <  1:50655/149‑1                                                            TCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGCCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGAT                                                                                          <  1:7343/149‑1                                                             CCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGCCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGATC                                                                                         <  7:215327/149‑1                                                                                                                                                       GCGCCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGATCCTGGTGCCGGGCATCACCAGCCCAGCGATCACCTGGGGCTTTGTCGCCGAGCGCCTTGGGCATTATTTCGACACCTATGTGCTGGAT  >  7:207836/1‑146                                                                                                                                                       GCGCCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGATCCTGGTGCCGGGCATCACCAGCCCAGCGATCACCTGGGGCTTTGTCGCCGAGCGCCTTGGGCATTATTTCGACACCTATGTGCTGGAT  <  8:207836/146‑1                                                                                                                                                                                                                                                                                                          AAGCGTCGGTGCCGTAGTCCAGGTCGGGGCCGCTTGAAGACAAGCCACGCCCGCGCACATCCAGCACATAGGTGTCGAAATAATGCCCAAGGCGCTCGGCGACAAAGCCCCAGGTGATCGCTGGGCTGGTGATGCCCGGCACCAGGATCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4446185‑4446338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcCAATGGCATCCGCCAGCATTACCTGCGCTATGGCGGCAAGGGCCATGCGCTGATCCTGGTGCCGGGCATCACCAGCCCAGCGATCACCTGGGGCTTTGTCGCCGAGCGCCTTGGGCATTATTTCGACACCTATGTGCTGGAT  <  NC_002947/4446384‑4446243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.