New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5133434 =	69 (1.280)	5 (0.100)	4/256	NT	6.3%	coding (516/1359 nt)	tolC	agglutination protein
	?	NC_002947	5133494 =	81 (1.550)					coding (576/1359 nt)	tolC	agglutination protein

CTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTTTCCGCCAGGGCGCGACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5133584‑5133434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCAGAGCATCAAGGGCGAGGTGCCAGGCACCCTCGAAGAA  >  NC_002947/5133494‑5133635                                                                                                                                                                                                                                                                                                       CTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTTTCCGCCAGGGCGCGACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGC                                                                                                                                                  >  3:240505/1‑149                                                                                              GCGACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAG                                                     >  1:37056/1‑149                                                                                              GCGACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAG                                                     >  6:250519/1‑149                                                                                                GACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCT                                                   >  2:55154/1‑149                                                                                                 ACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTG                                                  >  8:104419/1‑149                                                                                                                                  GCCGACGCCGCGCTCGTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCAGAGCATCAAGGGCGAGGTGCCA                 <  5:250519/149‑1                                                                                                                                                 GTTGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCAGAGCATCAAGGGCGAGGTGCCAGGCACCCTCGAAGAA  <  7:104419/149‑1                                                                                                                                                                                                                                                                                                       CTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTTTCCGCCAGGGCGCGACGGGCGCGGGACTGGTCGAGGTCGGCGGTGCTGCCGACGCCGCGCTCGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5133584‑5133434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCAGAGCATCAAGGGCGAGGTGCCAGGCACCCTCGAAGAA  >  NC_002947/5133494‑5133635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.