New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5264459 =	56 (1.040)	4 (0.080)	4/254	NT	6.8%	coding (69/198 nt)	PP_4640	hypothetical protein
	?	NC_002947	5264492 =	55 (1.060)					coding (36/198 nt)	PP_4640	hypothetical protein

CCGCCTTGGGCCGCAAAGAACGCAGCGACAAGGAAACCCCGTTCCAGGCGTTGCCTGACGCGTAATCGAGAGGACTGCAATCATGTTCAACGACTTGGGTCGACTGGGCAAATACCTGGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5264609‑5264459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAAGGCGGCGTAGCCGACCTTGATGGCGAAGAACAGGA  >  NC_002947/5264492‑5264639                                                                                                                                                                                                                                                                                                             CCGCCTTGGGCCGCAAAGAACGCAGCGACAAGGAAACCCCGTTCCAGGCGTTGCCTGACGCGTAATCGAGAGGACTGCAATCATGTTCAACGACTTGGGTCGACTGGGCAAATACCTGGGGCAGGCAGCCCGCCTGATGGTCGGCATGC                                                                                                                                                        <  2:148559/149‑1                                                                                                                    CTGGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCCCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAA                                     <  5:165763/149‑1                                                                                                                    CTGGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCCCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCC                                       >  6:165763/1‑147                                                                                                                      GGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCCCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGT                                                           >  3:221457/1‑125                                                                                                                      GGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCCCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGT                                                           <  4:221457/125‑1                                                                                                                                                      CCCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAAGGCGGCGTAGCCGACCTTGATGGCGAAGAACAGG   <  4:224167/149‑1                                                                                                                                                       CCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAAGGCGGCGTAGCCGACCTTGATGGCGAAGAACAGGA  >  4:295421/1‑149                                                                                                                                                       CCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAAAGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAAGGCGGCCTAGCCGACCTcg                  >  8:104844/1‑131                                                                                                                                                                                                                                                                                                             CCGCCTTGGGCCGCAAAGAACGCAGCGACAAGGAAACCCCGTTCCAGGCGTTGCCTGACGCGTAATCGAGAGGACTGCAATCATGTTCAACGACTTGGGTCGACTGGGCAAATACCTGGGGCAGGCAGCCCGCCTGATGGTCGGCATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5264609‑5264459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccCAGGTATTTGCCCAGTCGACCCAAGTCGTTGAACATGATTGCAGTCCTCTCGATTACGCGTCAGGCAACGCCTGGAACGGGGTTTCCTTGTCGCTGCGTTCTTTGCGGCCCAAGGCGGCGTAGCCGACCTTGATGGCGAAGAACAGGA  >  NC_002947/5264492‑5264639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.