| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5432474 = | 69 (1.280) | 4 (0.080) | 4/250 | NT | 5.6% | coding (328/519 nt) | PP_5713 | hypothetical protein |
| ? | NC_002947 | 5432525 = | 69 (1.350) | coding (379/519 nt) | PP_5713 | hypothetical protein | |||||
TGCCTCAATAGGAACGTGATCACTTCGCCTTCCTCGACGTTGAGCCAGGCTACCCACTCCCCACTCCTGTGCGGCGTATCCGTGAGGGCGCCGACCCTGTAGCCCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5432628‑5432474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGC > NC_002947/5432525‑5432670 TGCCTCAATAGGAACGTGATCACTTCGCCTTCCTCGACGTTGAGCCAGGCTACCCACTCCCCACTCCTGTGCGGCGTATCCGTGAGGGCGCCGACCCTGTAGCCCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGC > 5:132901/1‑149 TCAATAGGAACGTGATCACTTCGCCTTCCTCGACGTTGAGCCAGGCTACCCACTCCCCACTCCTGTGCGGCGTATCCGTGAGGGCGCCGACCCTGTAGCCCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGC > 3:320309/1‑149 CCCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTA > 3:42673/1‑149 CCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGGGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTAT > 3:5807/1‑149 CCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATT > 1:184745/1‑149 TGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGA < 2:184745/149‑1 CAGCGGGGCTACAGGGTCGGCGCCCTCACGGATATGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAAT < 6:98072/149‑1 CAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAAT < 2:43036/149‑1 CAGCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAAT < 4:82620/149‑1 GCGGGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGG > 2:334997/1‑149 CGGGGCTACAGGGTCGGCGCACTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGC < 4:5807/149‑1 TGCCTCAATAGGAACGTGATCACTTCGCCTTCCTCGACGTTGAGCCAGGCTACCCACTCCCCACTCCTGTGCGGCGTATCCGTGAGGGCGCCGACCCTGTAGCCCCGCTGGTCGCGCAGATGGCAGACAAGTCCTTCATCTGTCAGCGCCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5432628‑5432474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggGGCTACAGGGTCGGCGCCCTCACGGATACGCCGCACAGGAGTGGGGAGTGGGTAGCCTGGCTCAACGTCGAGGAAGGCGAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGC > NC_002947/5432525‑5432670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |