New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5523477 =	54 (1.000)	4 (0.080)	3/248	NT	7.5%	coding (1396/2067 nt)	yhjG	protein YhjG
	?	NC_002947	5523557 =	48 (0.950)					coding (1316/2067 nt)	yhjG	protein YhjG

TGCACAGCGCGCAACTGCCGTTCACTGACCTGTCGGCCCATGTGGTGCTCGAAGACGGCCTGTTACGCCTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5523629‑5523477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggcTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCGCGCTGTGCACGATGCGCTTGC  >  NC_002947/5523557‑5523641                                                                                                                                                                                                                                                TGCACAGCGCGCAACTGCCGTTCACTGACCTGTCGGCCCATGTGGTGCTCGAAGACGGCCTGTTACGCCTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAG                                                                                           >  5:309155/1‑149   CACAGCGCGCAACTGCCGTTCACTGACCTGTCGGCCCATGTGGTGCTCGAAGACGGCCTGTTACGCCTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGG                                                                                         <  5:104177/149‑1                                                                     CTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGCTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCG                       >  3:243663/1‑149                                                                     CTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGCTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCG                       >  4:303436/1‑149                                                                            CCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGCTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCGCGCTGTG                <  4:243663/149‑1                                                                                          GTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGCTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCGCGCTGTGCACGATGCGCTTGC  <  3:303436/149‑1                                                                                                                                                                                                                                                TGCACAGCGCGCAACTGCCGTTCACTGACCTGTCGGCCCATGTGGTGCTCGAAGACGGCCTGTTACGCCTGGAGCCCCTGCGCTTTGGCGTGGCCGGCGGCAGCCTGGCCTCCAACATCCGCCTGGACGGGCGCAGCGTGCCCTTGCAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5523629‑5523477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggcTCCAGGCGTAACAGGCCGTCTTCGAGCACCACATGGGCCGACAGGTCAGTGAACGGCAGTTGCGCGCTGTGCACGATGCGCTTGC  >  NC_002947/5523557‑5523641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.