New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5536339 =	53 (0.980)	3 (0.060)	3/250	NT	5.7%	coding (144/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase
	?	NC_002947	5536392 =	50 (0.980)					coding (197/828 nt)	nadE	NH(3)‑dependent NAD(+) synthetase

GGGCGTCATGCTCGTCATGCTGTACCTGGTACGGCAGGCGCACGGCAATGAAGGTGTAGGCCTTGTCGCCGGTCTCGGCGCGCAGCTCGTTGATGGCGCGCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5536490‑5536339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcGCGCCATCAACGAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGACGAGCATGACGCCCAGGCATGCCTGGAAGTTATCAAGGCAGATGAAGTTCACACGGTGGAT  >  NC_002947/5536392‑5536537                                                                                                                                                                                                                                                                                                            GGGCGTCATGCTCGTCATGCTGTACCTGGTACGGCAGGCGCACGGCAATGAAGGTGTAGGCCTTGTCGCCGGTCTCGGCGCGCAGCTCGTTGATGGCGCGCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCC                                                                                                                                                        >  1:228493/1‑148                                                        GTAGGCCTTGTCGCCGGTCTCGGCGCGCAGCTCGTTGATGGCGCGCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGC                                                                                                                                                    >  3:273144/1‑97                                                        GTAGGCCTTGTCGCCGGTCTCGGCGCGCAGCTCGTTGATGGCGCGCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGC                                                                                                                                                    <  4:273144/97‑1                                                                                                 CGCGCTGCGCGAGCAGGGCGGCAGACAGTGAGTCGACGCCACCGCTGATGCCCACCGCGCCATCAACGAGCTGCGCGACGACACCGGCGACAACGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGACGAGCAT                                                        >  8:3231/1‑148                                                                                                    GCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGCGCGCCATCAACGAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGA                                                               <  3:245436/138‑1                                                                                                    GCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGCGCGCCATCAACGAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGA                                                               >  4:245436/1‑138                                                                                                                                                    CCAGCGCGCCATCAACCAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATCACGAGCATGACGCCCAGGCATGCCTGGAAGTTATCAAGGCAGATGAAGTTCACACGGTG     >  1:315645/1‑148                                                                                                                                                      AGCGCGCCATCAACGAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGACGAGCATGACGCCCAGGCATGCCTGGAAGTTATCAAGGCAGATGAAGTTCACACGGTGGAT  <  4:166814/149‑1                                                                                                                                                                                                                                                                                                            GGGCGTCATGCTCGTCATGCTGTACCTGGTACGGCAGGCGCACGGCAATGAAGGTGTAGGCCTTGTCGCCGGTCTCGGCGCGCAGCTCGTTGATGGCGCGCTGGGCGAGCAGGGCGGCAGTCAGTGAGTCGACGCCACCGCTGATGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5536490‑5536339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagcGCGCCATCAACGAGCTGCGCGCCGAGACCGGCGACAAGGCCTACACCTTCATTGCCGTGCGCCTGCCGTACCAGGTACAGCATGACGAGCATGACGCCCAGGCATGCCTGGAAGTTATCAAGGCAGATGAAGTTCACACGGTGGAT  >  NC_002947/5536392‑5536537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.