| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5617601 = | 51 (0.950) | 3 (0.060) | 3/254 | NT | 5.7% | coding (1051/1176 nt) | wzy | O‑antigen polymerase |
| ? | NC_002947 | 5617660 = | 50 (0.970) | coding (992/1176 nt) | wzy | O‑antigen polymerase | |||||
CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617750‑5617601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > NC_002947/5617660‑5617806 CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCC < 7:170261/149‑1CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGC < 5:334315/148‑1CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGATGGGCTTCTGGGTCTAATCGAACCTGGCCATGCAGTTCGATGCC > 5:22757/1‑149 TTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGC > 7:9208/1‑145 TTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGC < 8:9208/145‑1 CCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCG < 5:77369/138‑1 CCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCG > 6:77369/1‑138 TGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCT > 3:190583/1‑148 GCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCT < 2:31879/147‑1 CCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCGCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGGGATCGAAGTGCATGCCGACGGCGCTCAC > 3:175354/1‑149 CGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > 1:17624/1‑149 CGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > 4:135744/1‑149 CGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC < 8:125429/149‑1 CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617750‑5617601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > NC_002947/5617660‑5617806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |