| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5773850 = | 56 (1.040) | 4 (0.080) | 3/248 | NT | 7.3% | coding (413/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
| ? | NC_002947 | 5773914 = | 49 (0.970) | coding (477/657 nt) | betI | choline‑responsive transcriptional repressor BetI | |||||
TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774004‑5773850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTA > NC_002947/5773914‑5774007 TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACT > 5:168896/1‑149TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACT > 5:19961/1‑149 ATGTTTTAGTAATCCATCCGTATCGCCTGGTTGGTGTCGTATGCATCACCCGACATGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCA < 6:158079/149‑1 ATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGG > 5:339612/1‑147 GGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACC > 4:187836/1‑121 GGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACC > 8:105830/1‑121 CAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGG > 8:89141/1‑148 CGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTA > 8:14811/1‑148 TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5774004‑5773850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTA > NC_002947/5773914‑5774007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |