| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5941251 = | 59 (1.100) | 5 (0.100) | 3/254 | NT | 8.6% | coding (1090/1113 nt) | yhhJ | translation‑like protein |
| ? | NC_002947 | 5941300 = | 50 (0.970) | intergenic (+26/+155) | yhhJ/PP_5722 | translation‑like protein/hypothetical protein | |||||
CAGCAATTACAGAGCCGGGCAGGTATATGGCGATGACAAGTCGACCTGTCTGTGAGTAGGGCGCCGAAAGGCGCCCTTTGTCTTTGTGCCAGTTTTCCAATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5941400‑5941251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaaATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATTGCTGGTCGAACCAGGATCCTCAGAGTCTTACAAGCCCCTTGCGGGAA > NC_002947/5941300‑5941443 CAGCAATTACAGAGCCGGGCAGGTATATGGCGATGACAAGTCGACCTGTCTGTGAGTAGGGCGCCGAAAGGCGCCCTTTGTCTTTGTGCCAGTTTTCCAATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGA > 1:243088/1‑148CAGCAATTACAGAGCCGGGCAGGTATATGGCGATGACAAGTCGACCTGTCTGTGAGTAGGGCGCCGAAAGGCGCCCTTTGTCTTTGTGCCAGTTTTCCAATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGA > 3:104667/1‑148 AATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAAATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATT > 7:139508/1‑149 AATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAAATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATT > 7:143912/1‑149 ATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAAATTGGAAAACT‑GCACAAAGACAAAGGGCGCCTTTCGGAGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCACGGCTCTGTAATTGC > 4:205804/1‑149 TCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAAATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATTGCTG < 8:143912/148‑1 TCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAAATTGGAAAACTGGCACAAAGACAAAGGGCGCCGTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATTGCTG < 8:139508/148‑1 CGACGAAAATTGGAAAACT‑GCACAAAGACAAATGGCGCCTTTCGGCGCCCTACTAACAGAGAGGTCGACTTGTCAGCGCCATATACCTGCCCGGCTCTGTAATTGATGGTCGAACCAGGATCCTCAGAGTCTTACAAGCCCCTTGCGG < 3:205804/148‑1 GAAAATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTAACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATTGCTGGTCGAACCAGGATCCTCAGAGTCTTACAAGCCCCTTGCGGGAA > 7:32796/1‑148 CAGCAATTACAGAGCCGGGCAGGTATATGGCGATGACAAGTCGACCTGTCTGTGAGTAGGGCGCCGAAAGGCGCCCTTTGTCTTTGTGCCAGTTTTCCAATTTTCGGCGGACGCTCGCGCATGCCTTCAAGACGCCAGGCTCCGACGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5941400‑5941251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaaATTGGAAAACTGGCACAAAGACAAAGGGCGCCTTTCGGCGCCCTACTCACAGACAGGTCGACTTGTCATCGCCATATACCTGCCCGGCTCTGTAATTGCTGGTCGAACCAGGATCCTCAGAGTCTTACAAGCCCCTTGCGGGAA > NC_002947/5941300‑5941443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |