| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 250227 = | 47 (0.870) | 6 (0.120) | 5/244 | NT | 13.0% | coding (976/1347 nt) | nfeD | membrane bound peptidase NefD |
| ? | NC_002947 | 250271 = | 37 (0.740) | coding (932/1347 nt) | nfeD | membrane bound peptidase NefD | |||||
GCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGAC > NC_002947/250080‑250371 | gCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATgcc < 5:56676/148‑1 (MQ=255) ctgttgttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGc > 6:124823‑M1/147‑149 (MQ=255) gggCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGCCAACGATgccgcc > 2:93192/1‑148 (MQ=255) gttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGaa > 1:151299‑M1/142‑148 (MQ=255) gttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGaa > 2:79899‑M1/142‑148 (MQ=255) ttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGc < 8:262591‑M1/9‑1 (MQ=255) ttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGACGAAGc < 7:157680‑M1/9‑1 (MQ=255) ttGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGcc > 5:38664/1‑149 (MQ=255) cgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGcc > 1:53882‑M1/139‑148 (MQ=255) gaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGa < 6:172129‑M1/12‑1 (MQ=255) gagCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGAc > 4:294970/1‑148 (MQ=255) ccATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACg > 8:283006/1‑149 (MQ=255) atgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGc < 1:247808‑M1/18‑1 (MQ=255) tGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGcc > 7:179892/1‑148 (MQ=255) tGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCAACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGcc > 7:251437/1‑148 (MQ=255) gCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCg > 2:176087/1‑148 (MQ=255) cACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCAACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTgg < 8:251437/149‑1 (MQ=255) gCCACCGATCAGGAGTGCCGAGAGAAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGATCGTGGGTGTCGATCTGGATCAATGAGACGTCCACAAAGGCATAGATGCCGACTAAGCAGACAACGACGAAACTtgga > 8:274259/1‑147 (MQ=255) aTCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGc > 5:280245/1‑149 (MQ=255) ggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCgg > 2:247808‑M1/108‑149 (MQ=255) ggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCgg > 1:259077‑M1/108‑149 (MQ=255) gAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCgg > 2:50021/1‑149 (MQ=255) gAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCgg < 1:313976/149‑1 (MQ=255) gtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGa > 5:172129‑M1/105‑149 (MQ=255) ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGAt < 8:179892/148‑1 (MQ=255) ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGAt < 1:176087/148‑1 (MQ=255) agcagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGaa < 7:283006/149‑1 (MQ=255) tggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCg > 2:285346‑M1/97‑137 (MQ=255) tggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCg < 1:285346‑M1/41‑1 (MQ=255) gcagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAg < 2:28657/149‑1 (MQ=255) agcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGt > 3:117744/1‑149 (MQ=255) cgcCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGa < 6:332007/149‑1 (MQ=255) tGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAg > 7:262591/1‑148 (MQ=255) ccGATCAAGGCCAGGGGTATGCCGAAACCGTGAGGGGCGGTGTCGATCATGATCAATGCGCCGACCACAATGGCAACGATGCCGGCGAAGCCAACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAg < 1:93192/149‑1 (MQ=255) aaGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACTTCAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGCAACTGGGCAAGAAGGCTTAGGGGCTCATGAAGGTGATGCCAAGCAGGCTCAg > 1:98280/1‑149 (MQ=255) tgggcAGCGGGATGCCGTAACCGGGAGCGGCGGTGTCGATCAGGATCAATCGGCAGTCGACAAAGGCAACGATGCCGCCGAAGCCGACCAGTCCGAAACTGGGCAAGAAGGATTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc < 4:31646/145‑1 (MQ=255) ccAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCCCAAAGGCAACGATGCCGCCGAAGCCGCCCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGcc > 8:256756/1‑149 (MQ=255) gATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCg > 4:201894/1‑148 (MQ=255) aTGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc > 1:138294/1‑138 (MQ=255) aTGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc < 2:138294/138‑1 (MQ=255) cGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCaaaa < 1:50021/149‑1 (MQ=255) aaaCCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACt > 8:310585/1‑149 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCaag > 4:28515/1‑86 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCaag < 3:28515/86‑1 (MQ=255) gTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCg > 8:202136/1‑143 (MQ=255) gTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCg < 7:202136/143‑1 (MQ=255) gATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAgc < 3:201894/148‑1 (MQ=255) ggATCAATGCGCCTACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATAc < 3:294970/149‑1 (MQ=255) gATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGc > 1:244885/1‑75 (MQ=255) gATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGc < 2:244885/75‑1 (MQ=255) gATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATa > 4:81501/1‑147 (MQ=255) ccGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCcagcag > 5:185098/1‑149 (MQ=255) ccaCCACAAAGGCAACGATGCAGCCTAAGACGACCACGCCGAAACAGGCCAAGAAGGCATCGTCGATCATGAAGGTCATTCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCcagcagc < 7:269513/147‑1 (MQ=255) ccaCCACAAAGGCAACGAAGCCGCCGAAGCCTACCACGCCGAAACTCGGCAAGAAGGCTTCGGCGATCATCAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACACCTGCAGCGCATACAGCGCcagcagc < 7:274259/147‑1 (MQ=255) aCCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCgg > 8:85757/1‑116 (MQ=255) cttcggcggCATCGTTGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg > 1:290178/8‑149 (MQ=255) cacaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg > 7:149150/1‑148 (MQ=255) acaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg > 6:166165/1‑147 (MQ=255) aaGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGAt < 6:185098/149‑1 (MQ=255) aaGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGAt < 4:320083/149‑1 (MQ=255) aGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAGCTCACCGGCAACAGCTGCAGCGCATa > 3:100202/1‑127 (MQ=255) aGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAGCTCACCGGCAACAGCTGCAGCGCATa < 4:100202/127‑1 (MQ=255) tGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGAc > 8:157680/1‑148 (MQ=255) | GCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGAC > NC_002947/250080‑250371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |